XLOC_005232 (foxh1)


Basic Information

Item Value
gene id XLOC_005232
gene name foxh1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 13722385 ~ 13730501 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00010078
GAGAAAGGTCCACACATGTGGGACATATCGTGGAAAGGCCACTTAAACTGCCTTTCACAGTAAATCTGATCGCTGATGTATAGTGTCCTCCCCCGCGGTGATCGCGCATCGCGCCTCATTCTCACTCCCATTACGCAGCGGGATTGACATGAAACTGTGAATTGTTTGCTGCTCAAATAGAGTTGACCTGGAGCCAGCAGTCTGAGGGGTTGAGGAGCGACCATACCTTCCACCTCCCCCCACTACATCAGCATGACAAAGCACTGGGGGGGTCCAGGCTTGTTGGCACCACCCGTGATCACCGTAGGAGAAGGAGCACAACGCGACCATCACCTTGACTGCAGAATCGGCTATTCCTCTTCCAAGCGCAGCTGTCATCGCTCCTCAAACCCTTTGCTGGAGCTCGGTGGCCGGCTGGATAAGTCCACAGGGATGGCGCAGGACTCTTGTTATAGAGCCAAAGCGACGAATCAAGGCCCATGGGAACTGCAGGATGGAAACTCCAGTGGAGGAAAGAAGAAAAACTATCAGCGTTATCCCAAACCACCGTACTCTTACCTGGCAATGATCGCAATGGTCATCCAGAACTCGCCAGAGAAGAAGCTTACTTTATCAGAGATTCTGAAGGAGATCAGCACTCTCTTTCCATTCTTTAAGGGGAATTACAAAGGCTGGAGGGACTCTGTCCGACACAACCTGTCTTCATATGACTGCTTTGTCAAGGTGCTTAAAGATCCTGGAAAACCTCAAGGTAAAGGTAACTTTTGGACTGTGGAAGTGAACCGAATTCCCTTGGAGCTGCTAAAGAGACAAAATACAGCAGTGTCCCGTCAGGATGAAACCATCTTTGCTCAGGACCTGGCTCCGTACATCTTTCAAGGTTACAGTCAGCCGAACAAGTCCAAACCTCTTCCCCCTGAATCATCTTTACCCCCTGTTCCAACCCGTCACAGCCCACCTCCATCAGAGGACCCATATCGTCCCAAATTGGACTCTACGTTTGCTATAGATTCTCTCCTGCATAGCCTCAGGCCTGCCAGTTCAGCTGGGGAGGGGTTACGGGAGAGAGAAAGTTGGGGCGTCGGACCTCCTCCACACACTCGCTCTACCACTCCCCCACGCCCTTGTAATGCTTCATACAATGGCAGTTCATCAGCCAGCTCTGTCAGTCCCGCATCCGATTTTTCTGATGAGGACTGGAGAGGGGTGACAGTTGTTGGGAAAAGATCAGGAGACAGAGGAATAACATCAGATGCATACAGTGACTCCTGTCCTCCACCAAACAAAAGTTCCAAACGAGGCAACACCCCGCCATGGGAGCTACCTACTTCCTATGCCAAGTACACCCCTCCCAATGCTGTAGCCCCTCCAAGCATGCGCTTTAATGGAAATCCATTCATGCCACTAGGTGGTATTCCATTCTATGGTTATGGTAGTGCACACGTTACTACATCACATCTGATAGGTCACCCATACTGGCCCATTCTGCCAAGTGGGCCAGTATCCATACAAGCACCTCCCCTTCTCATGGACTTGGACAGTATGCTGCAATCAGTTCCGCCCAATAAGAGCGTGTTTGATGCGCTTGGATCCAACAATCAGACTGTTCATCCGTCTCCAAACCAGTATGCCCTACAGAACGGACCTTCCCTTTGCAAATATTCTCTTTAAACTGTCCACATCCATCTCAGAATAGTCTTGGAGGAAAAGGTTTTCCTATTTTGGGCACTGCTGACATTCTCTGGGGGAAATGTACAACAGCTGGCTGCAGGAGCAGTCTTTTCAAAGGGATATTTTGCCTTATTTACGCACAAAAATTTATACTAGTACTTTAAAGGGTACATGCTACTACTCTACTGGTAAAAAGGTAACTTTTTTTGTGGTAGATAGGGTATAAAGATAATATTTTCAGTGCTGCACTGCCCTGGCAACAAGCTGTTGTACAGTTTATGCACATGTTTGGCATGGCAGTGCAAGTTTATACAAAGATTTGCAATAACTAATGCTGCTCATCACAGGATAGACCAACTGTGGCTTGTCTCAGGGAAATTCTTTATGAACAGAACTGAAAATACAGTTAAAACAGGCCAATATTGACCAAACATTTAATTGACTCCATTGTAACTCATGTGACTTTCTTTAACACAGTTACTACCTCAGAATTTTACAATCTTTGAAGAGGAGCATTTGCTGCTCTTGTTTTCTAATATTGGCCCTTGTAATGTTTTGTGATAATGCAATGAAACACTTGACTTGAGCAGTGGAATGTTGTCTGTTTATGAGTTGTTTTACTTCGTAAATGGACAGTTGCAGGAATAAGCAATGTGTTCGTGTGTGAATGTGTAGAAACTGTGAGGAACCTGCAATGTTTACATAAAGACAGGCCTTTATGCCATGAATGTGTCACTGTTTATACATTAGCTTTTACCAtgttttttgtgtatgtgtatattttttaGACATGATTCCCACAGCCAGTTCTTAgttgtttttaaaacactttcattACACCCCCATTCCAATTGGTAAAGTCCAATCTCAGGTTCTGATAACAGTGGTGGGGGCTTGACAGATCTGATGAGATCcagtcttgtgtgtgtgttttgttattACTGGCAAACATTCACTTTGAAGAACTGTAATTGGAGCCATTTTTATCAGTGTACTGTGTCAAATCCTTATCACTACTCATTGTGTTCCTGTGGAATGTAGGTGGTGTAACTACGATTTTTAGAATCTGCCTTTTTTAATATGACTGCTTATTTCAcccttttaaaaatgtcaatttgtATAAAATGATCTAAAAGCTCATATTGAGCAATTTGGTCATTGATTGAATGTAAGCATCGTTTAATTGGTGGTCTGTGgttgtctctgtctgtctggtgCACGTCATCCCATCACCTCCTGCTGCTATTTTCTGTCCTgtcctttttttaaaatcattcatcCACACCCCCAACACTTCCACCCTCTAGCAGGTCTATTCTTTGCAATGGGCTTTAATTTGAGTGTAGAGGGGATCCTCAGTTTGTGAGAGATTAACTTCCACTAAGTTTGAGTCTTTCTTTGTTGTATTATTATGTCATGAGAATGCAGTCAAACTGTATTGGTCGATTTGTTTTCAGTATGTTCATTTTAACCATATTTGTATAAAGCTACCTAATTCCTTAATTTCTctattttttagtgtttaaataTCAAATACAATATTTTAGTGATATGACTCACAGCACATATTTGGTtcctacacacaaaaaaaaggtacaaaagctgtcacagGGTGGTAAATTTTTTACACCGGTTTACACTGGTACCTTAAAAGAACATTTGTGCACTTGTAGGGTTTACTTTTGTACCTTTTAAGGTGCAAATGTGGACCtgataaaatttatatttatgtgtgtataaaatgtaccttttgaaatggtaccgccccagtgacagcttttgtacctttgttTCTAAGAGTGTGAATTATTTTTGATCACATTGTTACTGTCTAACAGTTATAtcataacttttgttttttgaagCCATTCAGAGTAGCTTTTTGAATGACCCCCCAAAAAACTGCCTTAACACTGATAGGAATAAAAAAATCATGAGATTAATACATCTAATGCATCATATGTTTTATAATCtattttaaaggtcaatattcaTTTTGTGAAGTAGCCTATCTAAAGTACACTGTGTACACTtgtaaaaaaggggaaaaaacagaGAAAGAAGAATTTAGAGTAACTTTAAAATTGAATGATTAAAACCAACAAGTTTTTATTTATCTGTAGTAGAGTTGTTTTTGACGATTGTAAAATAGTTTCATATTACGTTCTTTTCAAGCAATTAACTTTCTGAAATCATGTCAGTGGGTTTAATAGATTAATCATTTTCATTCCACATTGAAGGCAAAAAGCATCCACATGCATATATCTCGCATGTTATCATGCGCCAAAAGCATTTTACGTTATAAGAAATGATTTAGATTATTTGTTTTAGATACATTTCTTGGAAAGTCTTTAATGCACGGCATGCTTATGGATCAGCACAATATTTCTAATGAGAATTTGTTATTGCTTGAAGCTAATCTACAGTtgcaaacaaaattaataaacaacCCTGAATAATTAGCCCCGATTTTTTTGCCTAATTTTGGTTAAATGGAGTGAAGATTTATTATGGTTTTGAATATAATATTGCTTAagaattaaacaaaatcaaagaGGCACAttctaaaaaatgctggtttgTGTATTAGCCCAATGTAgtcaattttttaaaacccaattATTGTGTTTGTGCTCGTAGTGTggaacaataaaaaaatctacttaatATTTAGGTTTTGAATAAGTGGATTCACcacataattcattaaaatacattGGTGATTGTAGAATAAatcctgcaaaataaataaatgtatgaattaaaaaactagaaatcattgtttttttaatcaaaggTGAAATAACTTACAACCATTttccattgcaaaaaaaaagttctttaagATGTTAAAAAGTATCATAACGTTTCTTTTTCCATATATATGCAACCTCTCTGAAAACACCATTTGAGAATTATATTTTATAGGGGAATACAAAGCAAATATAGGCTCAAAAATAACcgcaatataaaatgtaataaaaataaaatggtataatataataaaaaaaaatataagaaattctgtttttaattatacaaggatttcatgtaaataaataaatgaatagataatcAGCAAACGGGAGAATAAATTCAccctgaaaatatttttttctgtttttaatttgtgaatAATTCTGTACAGATATGCTTTAGAACTACTACTAGGAAGGAATGACGAaggaaaaatatgtaaaaaatttttaaaattagGTTTAAAAAATAGGTTTTCCAaattatttgttaacattttaaccATTGAATTAAGTACATTTGgctaatcaattaatttatttataaaccgtgtatttcaagagttcacacttagctgatgattgattataaagctttttttggcatgctgtcccgggagagagccctgagctcaaaagatcctcgagcccgggtcTCCCTCttgtttgcaaggtgagagggaagtttgagctcaggtagatcttaggtagatcttgagaactcccctgctgtagtagctaatgaacagatagtgattgctcttaagctATACCTACTTACTAGAAGCATGTCTGGTTCTGATTTGGATAAGTccattaacttaagttgcatgtttttggacagtgggaggaaaccgcgGAACCTAGGGTAAACCCACGTGAACGTTGAGAATGAAACGTCGGTTGGCTTG
>TCONS_00010079
AAGAGCTAGTGGCGCGCGTGAATATAATCAATTTTACAGGAGAAAGGTCCACACATGTGGGACATATCGTGGAAAGGCCACTTAAACTGCCTTTCACAGTAAATCTGATCGCTGATGTATAGTGTCCTCCCCCGCGGTGATCGCGCATCGCGCCTCATTCTCACTCCCATTACGCAGCGGGATTGACATGAAACTGTGAATTGTTTGCTGCTCAAATAGAGTTGACCTGGAGCCAGCAGTCTGAGGGGTTGAGGAGCGACCATACCTTCCACCTCCCCCCACTACATCAGCATGACAAAGCACTGGGGGGGTCCAGGCTTGTTGGCACCACCCGTGATCACCGTAGGAGAAGGAGCACAACGCGACCATCACCTTGACTGCAGAATCGGCTATTCCTCTTCCAAGCGCAGCTGTCATCGCTCCTCAAACCCTTTGCTGGAGCTCGGTGGCCGGCTGGATAAGTCCACAGGGATGGCGCAGGACTCTTGTTATAGAGCCAAAGCGACGAATCAAGGCCCATGGGAACTGCAGGATGGAAACTCCAGTGGAGGAAAGAAGAAAAACTATCAGCGTTATCCCAAACCACCGTACTCTTACCTGGCAATGATCGCAATGGTCATCCAGAACTCGCCAGAGAAGAAGCTTACTTTATCAGAGATTCTGAAGGAGATCAGCACTCTCTTTCCATTCTTTAAGGGGAATTACAAAGGCTGGAGGGACTCTGTCCGACACAACCTGTCTTCATATGACTGCTTTGTCAAGGTGCTTAAAGATCCTGGAAAACCTCAAGGTAAAGGTAACTTTTGGACTGTGGAAGTGAACCGAATTCCCTTGGAGCTGCTAAAGAGACAAAATACAGCAGTGTCCCGTCAGGATGAAACCATCTTTGCTCAGGACCTGGCTCCGTACATCTTTCAAGGTTACAGTCAGCCGAACAAGTCCAAACCTCTTCCCCCTGAATCATCTTTACCCCCTGTTCCAACCCGTCACAGCCCACCTCCATCAGAGGACCCATATCGTCCCAAATTGGACTCTACGTTTGCTATAGATTCTCTCCTGCATAGCCTCAGGCCTGCCAGTTCAGCTGGGGAGGGGTTACGGGAGAGAGAAAGTTGGGGCGTCGGACCTCCTCCACACACTCGCTCTACCACTCCCCCACGCCCTTGTAATGCTTCATACAATGGCAGTTCATCAGCCAGCTCTGTCAGTCCCGCATCCGATTTTTCTGATGAGGACTGGAGAGGGGTGACAGTTGTTGGGAAAAGATCAGGAGACAGAGGAATAACATCAGATGCATACAGTGACTCCTGTCCTCCACCAAACAAAAGTTCCAAACGAGGCAACACCCCGCCATGGGAGCTACCTACTTCCTATGCCAAGTACACCCCTCCCAATGCTGTAGCCCCTCCAAGCATGCGCTTTAATGGAAATCCATTCATGCCACTAGGTGGTATTCCATTCTATGGTTATGGTAGTGCACACGTTACTACATCACATCTGATAGGTCACCCATACTGGCCCATTCTGCCAAGTGGGCCAGTATCCATACAAGCACCTCCCCTTCTCATGGACTTGGACAGTATGCTGCAATCAGTTCCGCCCAATAAGAGCGTGTTTGATGCGCTTGGATCCAACAATCAGACTGTTCATCCGTCTCCAAACCAGTATGCCCTACAGAACGGACCTTCCCTTTGCAAATATTCTCTTTAAACTGTCCACATCCATCTCAGAATAGTCTTGGAGGAAAAGGTTTTCCTATTTTGGGCACTGCTGACATTCTCTGGGGGAAATGTACAACAGCTGGCTGCAGGAGCAGTCTTTTCAAAGGGATATTTTGCCTTATTTACGCACAAAAATTTATACTAGTACTTTAAAGGGTACATGCTACTACTCTACTGGTAAAAAGGTAACTTTTTTTGTGGTAGATAGGGTATAAAGATAATATTTTCAGTGCTGCACTGCCCTGGCAACAAGCTGTTGTACAGTTTATGCACATGTTTGGCATGGCAGTGCAAGTTTATACAAAGATTTGCAATAACTAATGCTGCTCATCACAGGATAGACCAACTGTGGCTTGTCTCAGGGAAATTCTTTATGAACAGAACTGAAAATACAGTTAAAACAGGCCAATATTGACCAAACATTTAATTGACTCCATTGTAACTCATGTGACTTTCTTTAACACAGTTACTACCTCAGAATTTTACAATCTTTGAAGAGGAGCATTTGCTGCTCTTGTTTTCTAATATTGGCCCTTGTAATGTTTTGTGATAATGCAATGAAACACTTGACTTGAGCAGTGGAATGTTGTCTGTTTATGAGTTGTTTTACTTCGTAAATGGACAGTTGCAGGAATAAGCAATGTGTTCGTGTGTGAATGTGTAGAAACTGTGAGGAACCTGCAATGTTTACATAAAGACAGGCCTTTATGCCATGAATGTGTCACTGTTTATACATTAGCTTTTACCAtgttttttgtgtatgtgtatattttttaGACATGATTCCCACAGCCAGTTCTTAgttgtttttaaaacactttcattACACCCCCATTCCAATTGGTAAAGTCCAATCTCAGGTTCTGATAACAGTGGTGGGGGCTTGACAGATCTGATGAGATCcagtcttgtgtgtgtgttttgttattACTGGCAAACATTCACTTTGAAGAACTGTAATTGGAGCCATTTTTATCAGTGTACTGTGTCAAATCCTTATCACTACTCATTGTGTTCCTGTGGAATGTAGGTGGTGTAACTACGATTTTTAGAATCTGCCTTTTTTAATATGACTGCTTATTTCAcccttttaaaaatgtcaatttgtATAAAATGATCTAAAAGCTCATATTGAGCAATTTGGTCATTGATTGAATGTAAGCATCGTTTAATTGGTGGTCTGTGgttgtctctgtctgtctggtgCACGTCATCCCATCACCTCCTGCTGCTATTTTCTGTCCTgtcctttttttaaaatcattcatcCACACCCCCAACACTTCCACCCTCTAGCAGGTCTATTCTTTGCAATGGGCTTTAATTTGAGTGTAGAGGGGATCCTCAGTTTGTGAGAGATTAACTTCCACTAAGTTTGAGTCTTTCTTTGTTGTATTATTATGTCATGAGAATGCAGTCAAACTGTATTGGTCGATTTGTTTTCAGTATGTTCATTTTAACCATATTTGTATAAAGCTACCTAATTCCTTAA

Function

symbol description
foxh1 Enables DNA-binding transcription repressor activity, RNA polymerase II-specific; RNA polymerase II transcription regulatory region sequence-specific DNA binding activity; and SMAD binding activity. Acts upstream of or within several processes, including embryonic morphogenesis; nervous system development; and regionalization. Located in chromatin. Is expressed in several structures, including nervous system; oocyte; pericardial region; presumptive diencephalon; and ventral mesoderm. Orthologous to human FOXH1 (forkhead box H1).

GO:

id name namespace
GO:0001706 endoderm formation biological_process
GO:0001707 mesoderm formation biological_process
GO:0042074 cell migration involved in gastrulation biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0030154 cell differentiation biological_process
GO:0003143 embryonic heart tube morphogenesis biological_process
GO:0071345 cellular response to cytokine stimulus biological_process
GO:0021854 hypothalamus development biological_process
GO:2000223 regulation of BMP signaling pathway involved in heart jogging biological_process
GO:0010159 specification of animal organ position biological_process
GO:0000122 negative regulation of transcription by RNA polymerase II biological_process
GO:0046619 optic placode formation involved in camera-type eye formation biological_process
GO:0060971 embryonic heart tube left/right pattern formation biological_process
GO:0009653 anatomical structure morphogenesis biological_process
GO:0048854 brain morphogenesis biological_process
GO:0033504 floor plate development biological_process
GO:0010468 regulation of gene expression biological_process
GO:0001568 blood vessel development biological_process
GO:0009953 dorsal/ventral pattern formation biological_process
GO:0048319 axial mesoderm morphogenesis biological_process
GO:0048327 axial mesodermal cell fate specification biological_process
GO:0014028 notochord formation biological_process
GO:0007368 determination of left/right symmetry biological_process
GO:0045944 positive regulation of transcription by RNA polymerase II biological_process
GO:0048382 mesendoderm development biological_process
GO:0032525 somite rostral/caudal axis specification biological_process
GO:0030903 notochord development biological_process
GO:0001947 heart looping biological_process
GO:0021501 prechordal plate formation biological_process
GO:0021508 floor plate formation biological_process
GO:0060063 Spemann organizer formation at the embryonic shield biological_process
GO:0000785 chromatin cellular_component
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0001227 DNA-binding transcription repressor activity, RNA polymerase II-specific molecular_function
GO:0046332 SMAD binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-000616-15 Enables DNA-binding transcription repressor activity, RNA polymerase II-specific; RNA polymerase II transcription regulatory region sequence-specific DNA binding activity; and SMAD binding activity. Acts upstream of or within several processes, including embryonic morphogenesis; nervous system development; and regionalization. Located in chromatin. Is expressed in several structures, including nervous system; oocyte; pericardial region; presumptive diencephalon; and ventral mesoderm. Orthologous to human FOXH1 (forkhead box H1).

Ensembl:

ensembl_id ENSDARG00000055630

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00010078 False 5338 mRNA 0.39 3 13722385 13729263
TCONS_00010079 True 3213 mRNA 0.44 4 13724549 13730501

Neighbor

gene id symbol gene type direction distance location
XLOC_005231 stat5b coding downstream 71913 13560082 ~ 13650472 (-)
XLOC_005230 CR354395.2 coding downstream 165849 13553730 ~ 13556536 (-)
XLOC_005229 ghdc coding downstream 172847 13527422 ~ 13549538 (-)
XLOC_005228 lsm5 coding downstream 385348 13331526 ~ 13337037 (-)
XLOC_005227 emc9 coding downstream 403416 13311939 ~ 13318969 (-)
XLOC_005233 adam11 coding upstream 81130 13811631 ~ 13886952 (-)
XLOC_005234 dbf4b coding upstream 158169 13888670 ~ 13905307 (-)
XLOC_005235 klhl11 coding upstream 230767 13961268 ~ 13966184 (-)
XLOC_005236 aclyb coding upstream 242557 13973058 ~ 14078070 (-)
XLOC_005237 NA coding upstream 407785 14138286 ~ 14144159 (-)
XLOC_005224 NA non-coding downstream 616162 13102866 ~ 13106223 (-)
XLOC_005222 BX572641.1 non-coding downstream 1387054 12335216 ~ 12335331 (-)
XLOC_005214 NA non-coding downstream 2949439 10769131 ~ 10772946 (-)
XLOC_005200 NA non-coding downstream 3592483 10124660 ~ 10129902 (-)
XLOC_005199 BX928755.1 non-coding downstream 3658717 10060636 ~ 10063668 (-)
XLOC_005240 NA non-coding upstream 1109286 14839787 ~ 14840559 (-)
XLOC_005243 NA non-coding upstream 1387386 15117887 ~ 15120113 (-)
XLOC_005244 NA non-coding upstream 1394908 15125409 ~ 15126049 (-)
XLOC_005246 NA non-coding upstream 1512066 15242567 ~ 15244000 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000161_01187108_01189802 FOXH1 coding CI01000161 null 1185454 ~ 1189865 (+)