CI01000299_04227918_04239792 (EFNB2B)


Basic Information

Item Value
gene id CI01000299_04227918_04239792
gene name EFNB2B
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000299
NCBI id null
chromosome length 6567443
location 4227520 ~ 4239792 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000299_04227918_04239792.mRNA
ATCTGGACTGGTGAACTCTTTTTACATCGCAATGGATACAACTATGTGGAGTTATATATTTGGTCTTTTCGTGGTTGCTTGTCGAGTAAGACTGGCTCGATCAACAGTTTTAGAATCAATATATTGGAATACTTCGAACACCAAAGCTTTGGAGACAAAAGGTGCGCTGGGATGAAGGCACTGTTCACCCCCGTCCCGGTTTGTTCTCTACACAGAAGTTGGTTTGTTCCAGGAAGGGGTGTAGTACTATACCCTCAGATCGGAGACAAAATGGACATTGTGTGTCCAAGAATCAAGCCAGGCTCCACTGAGCAGATGAACATTGAATACTTCCGGGTCTATCTTGTTCCCAAGGAACAATTGGAGACCTGTAGTGTTACTAAAGGCGACATGTTACTGCTCAACTGTGACAAGCCGGACCAGGACGTGAAGTTCACCTTCAAGTTTCAAGAGTTCAGCCCCAACCTGTGGGGCCTGGAGTTCTTCAAAGGGAAGGACTATCACATCATCTCCACATCCAACAGCACGTTTGAAGGTTTGGACAACCATGATGGCGGTGTTTGTAAGACCAAATCCATGAAGCTGGTTCTGAGAGTTGGACAGAGTCCTACAGATTCATTCTCAGCAAAAAATCATCCCACAAGATATCCTCCGAAATACCCTGACAATAAGCACCAAAGCACCTTCAGCAAAGAGAACGATGTTGTCAGCAAAACTGACTCCATACAGAATGGTGAGGCCGGAGGGAAGAGCGGCGAGTCTGTAGGATCCGCTGGATCTGAAGTAGCCCTGTTCGCTGGTGTTGCATCCGGTGGTGTCATCTTCATCATCATCATCATCGCTCTTGTAGCACTGCTGCATCGGCGTCATCAGAAACACTCGGCACAGTGCTCCGCCCAGCTGCCGTTAAACACGCTGCCCAAACGCGGAAGTGCCGCCAGCGGCGGTAGCAACAATAATGGCTCCGAGCCCAGTGACATCATCTTCCCACTGCGAACCTCGGGAAGCATGTACTGTCCGCACTACGAGAAGATCTTGAAAATCGAACTTTTTAATGCACGAGAAGAGGCCTTGATTCCTGTACTTTGCAGTTTTTCGATGTGTGTCGAGTCCATCCGATGTGATTTAGGCTGTCTGCATCCCAAAGCTGGCCTGATGGATGCATATTACATATCAGTTCAGACATTTGTGGCCCTTATGCTGTTGATGTGCGAGCCGGTGTGGTCCAAAACGCATGTGGTTCTTTTATCCCCATTTGCTTATAACTTTTCAAACATTTATTCAAACAGCAAACAAACAAAACTAAAGATCAACATACAGAAAGATCGTTTGTTGACTTGGTAATGTAAATACAATAGCAGAGCATTGAAATTATGCTCCAAGTTATGTTTTCTATGAATCTGAACATTGCTCGTCCATTACGTTTCATCATTGAATGTTCAGTCAATTTTGTTAAAATACTTCAGGGGTTTACGTCAGCAAACAAGAAGCGACATGTTGGATATAATAGATTTTTTTTTTTTTTTTTTTAATCTTGCATTTGTTAAAATTGTTTGTTGGTTCTATAGCCAATAGTGTGTTGAGGAAATTTCACATTCCAGATGGCTGACAACATTGAACGAAATGATTCGCCATAGTCGCTTGTGCTGCTCGCTCTCTCTCTCTCTTTCTCTCTTTTTTTTTTTGCTTGAATGAATGAATGAATGAAAAGTTCACAAAATGTTTTCTATTGTTCAAATAAA

Function

symbol description
efnb2b Predicted to enable ephrin receptor binding activity. Acts upstream of or within Kupffer's vesicle development and blood vessel development. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. Is expressed in margin. Orthologous to human EFNB2 (ephrin B2).

GO:

id name namespace
GO:0001568 blood vessel development biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000299_04227918_04239792.mRNA True 1742 mRNA 0.43 7 4227520 4239792

Neighbor

gene id symbol gene type direction distance location
CI01000299_04186183_04196219 MX1, MXB, MXA coding downstream 29636 4184967 ~ 4197884 (-)
CI01000299_04171373_04175441 NA coding downstream 52079 4171149 ~ 4175441 (-)
CI01000299_04158468_04164223 MX2, MX1, MXB, MX, MXA coding downstream 62805 4158001 ~ 4164715 (-)
CI01000299_04136702_04142005 NA coding downstream 85395 4134820 ~ 4142125 (-)
CI01000299_03492360_03492614 NA coding downstream 734376 3492214 ~ 3493144 (-)
CI01000299_04242809_04251680 ARGLU1 coding upstream 2405 4242197 ~ 4251865 (-)
CI01000299_04370401_04385955 RADIL coding upstream 130609 4370401 ~ 4388020 (-)
CI01000299_04398464_04403711 NA coding upstream 156682 4393404 ~ 4403711 (-)
CI01000299_04456420_04468754 NA coding upstream 216437 4456229 ~ 4469450 (-)
CI01000299_04587880_04594059 ATP1A1A.4, ATP1A1A.5, ATP1A1A.3, ATP1A1 coding upstream 348002 4587794 ~ 4594120 (-)
G407330 NA non-coding downstream 19366 4207797 ~ 4208154 (-)
G407296 NA non-coding downstream 47893 4156825 ~ 4179627 (-)
G407318 NA non-coding downstream 98300 4129003 ~ 4129220 (-)
G407288 NA non-coding downstream 99880 4121679 ~ 4127640 (-)
G407306 NA non-coding downstream 160872 4066205 ~ 4066648 (-)
G407340 NA non-coding upstream 19690 4259482 ~ 4263461 (-)
G407343 NA non-coding upstream 26562 4266354 ~ 4266553 (-)
G407344 NA non-coding upstream 27427 4267219 ~ 4267442 (-)
G407348 NA non-coding upstream 32120 4271912 ~ 4272172 (-)
G407352 NA non-coding upstream 41372 4281164 ~ 4281377 (-)
G405053 NA other downstream 2209470 2017687 ~ 2018050 (-)
G404976 NA other downstream 2346532 1855639 ~ 1880988 (-)
G404784 NA other downstream 2567520 1659655 ~ 1660000 (-)
G404372 NA other downstream 3151629 1070607 ~ 1075891 (-)
G407413 NA other upstream 236202 4475994 ~ 4550721 (-)
CI01000299_04913779_04927715 NA other upstream 686176 4913373 ~ 4927715 (-)
CI01000299_05428160_05443433 APP, APPA other upstream 1201545 5427661 ~ 5443433 (-)
G407805 NA other upstream 1588044 5835889 ~ 5835989 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location