G407359


Basic Information

Item Value
gene id G407359
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000299
NCBI id null
chromosome length 6567443
location 4410503 ~ 4413402 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU468032
ACGCTTATCCTGTCTCTCTTTTCCTCAGCGAACTTTAGTAGGGTCAGGATGTTGCGGTTTAACACGTGCGGCTCTTCGGCAAGTCGCTTTGTGTCTGCAAGCGTATTCTTCAGTCTAAATAAAGTTGGGAGTTCAGAAACACGTGGCCATGGATGATGTTCGCCATTGGCGTTTGAACGGGAAGAACGTTCGCGTTTGATGCATCGATTCTTAAATCGCGATGAATGCGATCAATGGATTGCGCTTTCACTGACGGTTCAAATGTTGGAGTTCCTGACTGCAAAAAAGTAGTTTTGTGAGCTTTCACTGATGGTTCGAATGTTGGACTTCCTGACTGCGCAAAAAAAAAAAAAGTGGATTTGTGAGATGTGAGGACCAAGAAATCCATCCAGTGGCATTCAGTTTGGAATATGATCGCCTGTTTATGCATGGATGCCACTGTACAAAAGGGTGCATTTTTGAAACCATGAATATTTTATGTACTTCTAATTCTGTGTGTTTCATTGTTTCAATAAAAGTGAAC
>TU468033
ACGCTTATCCTGTCTCTCTTTTCCTCAGCGAACTTTAGTAGGGTCAGGATGTTGCGGTTTAACACGTGCGGCTCTTCGGCAAGTCGCTTTGTGTCTGCAAGCGTATTCTTCAGTCTAAATAAAGTTGGGAGTTCAGAAACACGTGGCCATGGATGATGTTCGCCATTGGCGTTTGAACGGGAAGAACGTTCGCGTTTGATGCATCGATTCTTAAATCGCGATGAATGCGATCAATGGATTGCGCTTTCACTGACGGTTCAAATGTTGGAGTTCCTGACTGCAAAAAAGTAGTTTTGTGAGCTTTCACTGATGGTTCGAATGTTGGACTTCCTGACTGCGCAAAAAAAAAAAAAGTGGATTTGTGAGGTGAGACCCTTTTAAGTTTTCTCCTAATATTGCAAAATTTTGTGACCTGTATTACTTAACTGCTCCATGGTTAATAGGTCTGATTGTGAACTCTCCTAGAGCAGTTTAACATCCTAAAATGCAATGTACCCTTGAATGATGCACCTTTACATCTTCATTTTTATTTGCAGATGTGAGGACCAAGAAATCCATCCAGTGGCATTCAGTTTGGAATATGATCGCCTGTTTATGCATGGATGCCACTGTACAAAAGGGTGCATTTTTGAAACCATGAA
>TU468034
ACGCTTATCCTGTCTCTCTTTTCCTCAGCGAACTTTAGTAGGGTCAGGATGTTGCGGTTTAACACGTGCGGCTCTTCGGCAAGTCGCTTTGTGTCTGCAAGCGTATTCTTCAGTCTAAATAAAGTTGGGAGTTCAGAAACACGTGGCCATGGATGATGTTCGCCATTGGCGTTTGAACGGGAAGAACGTTCGCGTTTGATGCATCGATTCTTAAATCGCGATGAATGCGATCAATGGATTGCGCTTTCACTGACGGTTCAAATGTTGGAGTTCCTGACTGCAAAAAAGTAGTTTTGTGAGCTTTCACTGATGGTTCGAATGTTGGACTTCCTGACTGCGCAAAAAAAAAAAAAGTGGATTTATGTGAGGACCAAGAAATCCATCCAGTGGCATTCAGTTTGGAATATGATCGCCTGTTTATGCATGGATGCCACTGTACAAAAGGGTGCATTTTTGAAACCATGAA
>TU468036
ACGCTTATCCTGTCTCTCTTTTCCTCAGCGAACTTTAGTAGGGTCAGGATGTTGCGGTTTAACACGTGCGGCTCTTCGGCAAGTCGCTTTGTGTCTGCAAGCGTATTCTTCAGTCTAAATAAAGTTGGGAGTTCAGAAACACGTGGCCATGGATGATGTTCGCCATTGGCGTTTGAACGGGAAGAACGTTCGCGTTTGATGCATCGATTCTTAAATCGCGATGAATGCGATCAATGGATTGCGCTTTCACTGACGGTTCAAATGTTGGAGTTCCTGACTGCAAAAAAGTAGTTTTGTGAGCTTTCACTGATGGTTCGAATGTTGGACTTCCTGACTGCGCAAAAAAAAAAAAAGTGGATTTGTGAGATGTGAGGACCAAGAAATCCATCCAGTGGCATTCAGTTTGGAATATGATCGCCTGTTTATGCATGGATGCCACTGTACAAAAGGGTGCATTTTTGAAACCATGAA
>TU468037
ACGCTTATCCTGTCTCTCTTTTCCTCAGCGAACTTTAGTAGGGTCAGGATGTTGCGGTTTAACACGTGCGGCTCTTCGGCAAGTCGCTTTGTGTCTGCAAGCGTATTCTTCAGTCTAAATAAAGTTGGGAGTTCAGAAACACGTGGCCATGGATGATGTTCGCCATTGGCGTTTGAACGGGAAGAACGTTCGCGTTTGATGCATCGATTCTTAAATCGCGATGAATGCGATCAATGGATTGCGGTAAGTGAACCTTAGACAATATATTCTGTTTGATATGCACTTTATATATAAAAATTATTGAGCCGCTGATGACTTCTAATACTTTTCTGACACCTCGTATGAACGCTGTATTCAGCAGCTGATTATGAAATGTAGTCTGAGGCTCTTTTGCTTTTGCATGTGATTGAATTTCATGCTATAGTTTTTTTTTTTTTTTTTTTGTCATATGTGAAGGTAATAGGCAAGATACTGATTTTTCTACAAGTAACTTGACATTATAGGCTTTTTGACTTAAAGCCTAGTCAGTTTTAGGTCCCTTGTTAAAATCACTATATAAAGTGTATGTATTTACTAATGTGGTTCTATAATTTTGAAATTAACTCCTAATGTGCGAATGGGAATAAGCCCCAGTTCTATAAATTTAAATCCCAATTTGGTGAGCACTTGGCTACAAAAGTCATGGAAATTCATTGGTCAAAGTGTGGGAACTCTTATTTTTGTAAGTTGTGTTAATTTGCATTTAAAGGGTTAGTTCATCCAAAAAATGAAATGTCAATAATTACTTGCCCTCATGTCATTCCACACCCGTAACGCAAATTAAGATATTTTTGAAATCCGATGGCTCAGTGAGGCCTGCATTGACCGCAAGATAATGCTTTCAATGTCCAGAAAGGTACTAAAGATGCCTTTTTAAAAGTTCATGTGACTACAGTGGTTCAACCTTAAACTTTATGAAGCGACGAGAATACTTTGTGTGCCATAAAAACAAAATAACGACTTTATTCAACTGTCTAGTGATGGGTGATTTCAAAACACTGCTTCATGAAGCTTCAAAGCTTTACAAATCTTGTTTTGAATCAGTGGTTCGGAGCTTGTATCAACTGCCAAAGTCACATGACTTCAGTAAATGATGCTTCGTTACGACACAAACGTTTCATAATTTCATTGGTTTGCGTCACTTTGGCTGTTTGATACAAGCTCTGAACCACTGATTCGAAACAAAAGATTCGTAAAGCTTCATGAAGCAGTGTTTTGAAATTGCCCGTCACTAGATATTGTTGAATAAAGTCATTTTGTTTAACTTTTTTTGGCACTCGTCGCTTCATAACATTAAGGTTGAACCACTGTAGTCGCGTGAACTATTTTAGATATCTTTAGTAGCTTTCTGGGCATTTGAAAGTGTTAATTATCTTACGGTCAATAGAGGCCTCCCTGAGCCATCGGATTTTATCAAAAATATCTTAATTTGTGTTCCGAAAATGAACGAAGGTCTTACAGGTGTGGAACGACATGAGGGTGAGTAACGACAGAATTTTCATTTTTGGCTGAACTAGCCCTTTAAGGTATGGCATTTCAGCTACTGAGGTTGCTCTGTTTTTTTTCCCCCTATCAGCTTTCACTGACGGTTCAAATGTTGGAGTTCCTGACTGCAAAAAAGTAGTTTTGTGAGGTGAGACCCTCTTCATTTCTCCTAATATTGCAAGTTTGTGAAATGTACTGCTTAACTGATCCATGGTGAATGAGTCTGATATAAAAATGATTGAGCCGCTGATGACTTCTACTACTAATACTTTTCTGACACCTCGTATGAACGCTGTATTCAGCAGCTGATTATGAACTGTAGTCTGAGGCTCTTTTACAATCACATGTATTAAGCAAATTTAGGATTCCAATGTGCATGCTAATGGTTTATGCCTTTTTATAGAGAACATGTAATGTTAATAGGCAAGATTCTGCTTTTCAGCATTATAGGCTTTTTGTCTTCACATGCTCTCGGAAATATCGTAAATACGAGTTTCCTAGGTTTAAAAATTTCACATGAACACCTCATTTCGAATGCGGCGAGCTTGTAATCACGACTTCAGAAGTGGGAATTATCAAATTTCCGATAGCACGTGAAGGCAGCATTAGCCCCAAATCTTATTTAAATCCCAATCTGGTGAGGACATGGCTACAAAAGTCATGGAAATTCAAAGTGTGGCAACTCTTATTTTTGTAAGTTGCATTTAAAGTATGGCATTTCAGCTACTGAGGTTGCTTTGTTTTTTCCCCATCAGCTTTCACTGATGGTTCGAATGTTGGACTTCCTGACTGCGCAAAAAAAAAAAAAGTGGATTTGTGAGGTGAGACCCTTTTAAGTTTTCTCCTAATATTGCAAAATTTTGTGACCTGTATTACTTAACTGCTCCATGGTTAATAGGTCTGATTGTGAACTCTCCTAGAGCAGTTTAACATCCTAAAATGCAATGTACCCTTGAATGATGCACCTTTACATCTTCATTTTTATTTGCAGATGTGAGGACCAAGAAATCCATCCAGTGGCATTCAGTTTGGAATATGATCGCCTGTTTATGCATGGATGCCACTGTACAAAAGGGTGCATTTTTGAAACCATGAA
>TU468035
ACGCTTATCCTGTCTCTCTTTTCCTCAGCGAACTTTAGTAGGGTCAGGATGTTGCGGTTTAACACGTGCGGCTCTTCGGCAAGTCGCTTTGTGTCTGCAAGCGTATTCTTCAGTCTAAATAAAGTTGGGAGTTCAGAAACACGTGGCCATGGATGATGTTCGCCATTGGCGTTTGAACGGGAAGAACGTTCGCGTTTGATGCATCGATTCTTAAATCGCGATGAATGCGATCAATGGATTGCGCTTTCACTGACGGTTCAAATGTTGGAGTTCCTGACTGCAAAAAAGTAGTTTTGTGAGCTTTCACTGATGGTTCGAATGTTGGACTTCCTGACTGCGCAAAAAAAAAAAAAGTGGATTTGTGAGGTGAGACCCTTTTAAGTTTTCTCCTAATATTGCAAAATTTTGTGACCTGTATTACTTAACTGCTCCATGGTTAATAGGTCTGATTGTGAACTCTCCTAGAGCAGTTT
>TU468038
ACGCTTATCCTGTCTCTCTTTTCCTCAGCGAACTTTAGTAGGGTCAGGATGTTGCGGTTTAACACGTGCGGCTCTTCGGCAAGTCGCTTTGTGTCTGCAAGCGTATTCTTCAGTCTAAATAAAGTTGGGAGTTCAGAAACACGTGGCCATGGATGATGTTCGCCATTGGCGTTTGAACGGGAAGAACGTTCGCGTTTGATGCATCGATTCTTAAATCGCGATGAATGCGATCAATGGATTGCGCTTTCACTGACGGTTCAAATGTTGGAGTTCCTGACTGCAAAAAAGTAGTTTTGTGAGGTGAGACCCTCTTCATTTCTCCTAATATTGCAAGTTTGTGAAATGTACTGCTTAACTGATCCATGGTGAATGAGTCTGATATAAAAATGATTGAGCCGCTGATGACTTCTACTACTAATACTTTTCTGACACCTCGTATGAACGCTGTATTCAGCAGCTGATTATGAACTGTAGTCTGAGGCTCTTTTACAATCACATGTATTAAGCAAATTTAGGATTCCAATGTGCATGCTAATGGTTTATGCCTTTTTATAGAGAACATGTAATGTTAATAGGCAAGATTCTGCTTTTCAGCATTATAGGCTTTTTGTCTTCACATGCTCTCGGAAATATCGTAAATACGAGTTTCCTAGGTTTAAAAATTTCACATGAACACCTCATTTCGAATGCGGCGAGCTTGTAATCACGACTTCAGAAGTGGGAATTATCAAATTTCCGATAGCACGTGAAGGCAGCATTAGCCCCAAATCTTATTTAAATCCCAATCTGGTGAGGACATGGCTACAAAAGTCATGGAAATTCAAAGTGTGGCAACTCTTATTTTTGTAAGTTGCATTTAAAGTATGGCATTTCAGCTACTGAGGTTGCTTTGTTTTTTCCCCATCAGCTTTCACTGATGGTTCGAATGTTGGACTTCCTGACTGCGCAAAAAAAAAAAAAGTGGATTTGTGAGGTGAGACCCTTTTAAGTTTTCTCCTAATATTGCAAAATTTTGTGACCTGTATTACTTAACTGCTCCATGGTTAATAGGTCTGATTGTGAACTCTCCTAGAGCAGTTT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU468032 False 523 lncRNA 0.42 5 4410503 4413402
TU468033 False 641 lncRNA 0.42 4 4410555 4413402
TU468034 False 466 lncRNA 0.44 5 4410555 4413402
TU468036 False 471 lncRNA 0.44 5 4410555 4413402
TU468037 False 2620 lncRNA 0.38 2 4410555 4413402
TU468035 False 473 lncRNA 0.43 4 4410723 4413402
TU468038 True 1080 lncRNA 0.40 3 4410723 4413402

Neighbor

gene id symbol gene type direction distance location
CI01000299_04398464_04403711 NA coding downstream 6792 4393404 ~ 4403711 (-)
CI01000299_04370401_04385955 RADIL coding downstream 22483 4370401 ~ 4388020 (-)
CI01000299_04242809_04251680 ARGLU1 coding downstream 158638 4242197 ~ 4251865 (-)
CI01000299_04227918_04239792 EFNB2B coding downstream 170711 4227520 ~ 4239792 (-)
CI01000299_04186183_04196219 MX1, MXB, MXA coding downstream 212619 4184967 ~ 4197884 (-)
CI01000299_04456420_04468754 NA coding upstream 42827 4456229 ~ 4469450 (-)
CI01000299_04587880_04594059 ATP1A1A.4, ATP1A1A.5, ATP1A1A.3, ATP1A1 coding upstream 174392 4587794 ~ 4594120 (-)
CI01000299_04603421_04609353 ATP1A1A.4, ATP1A1A.2, ATP1A1A.3, ATP1A1 coding upstream 189989 4603391 ~ 4609353 (-)
CI01000299_04645836_04651938 ATP1A1A.4, ATP1A1B, ATP1A1, ATP1A1A.1 coding upstream 232237 4645639 ~ 4651938 (-)
CI01000299_04658984_04668843 ATP1A1A.4, ATP1A1 coding upstream 245493 4658895 ~ 4669022 (-)
G407397 NA non-coding downstream 48265 4362007 ~ 4362238 (-)
G407387 NA non-coding downstream 60739 4349523 ~ 4349764 (-)
G407352 NA non-coding downstream 129126 4281164 ~ 4281377 (-)
G407348 NA non-coding downstream 138331 4271912 ~ 4272172 (-)
G407406 NA non-coding upstream 42044 4455446 ~ 4455680 (-)
G407408 NA non-coding upstream 53416 4466818 ~ 4467020 (-)
G407409 NA non-coding upstream 56610 4470012 ~ 4470215 (-)
G407414 NA non-coding upstream 65587 4478989 ~ 4554077 (-)
G405053 NA other downstream 2392453 2017687 ~ 2018050 (-)
G404976 NA other downstream 2529515 1855639 ~ 1880988 (-)
G404784 NA other downstream 2750503 1659655 ~ 1660000 (-)
G404372 NA other downstream 3334612 1070607 ~ 1075891 (-)
G407413 NA other upstream 62592 4475994 ~ 4550721 (-)
CI01000299_04913779_04927715 NA other upstream 512566 4913373 ~ 4927715 (-)
CI01000299_05428160_05443433 APP, APPA other upstream 1027935 5427661 ~ 5443433 (-)
G407805 NA other upstream 1414434 5835889 ~ 5835989 (-)

Expression


Co-expression Network