CI01000304_00728178_00731945 (ISOC1, ISOC1.L)


Basic Information

Item Value
gene id CI01000304_00728178_00731945
gene name ISOC1, ISOC1.L
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 727956 ~ 732274 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000304_00728178_00731945.mRNA
TGATAAAAATACAGACGAATGGAGCATACACAAGCAGATATTGTATTTGTATCTTTAGAAGCCTAACATGTTTTTATTGTATATCTGCTAAACGAACACATTTAACCCTACATAAGATCAGTCCACAACTTTATGAGTTCGGTTCTTATAAATCGATTCTTAAGAACAATTCATTTGTGAGTCGGACATCACTATGATTTCATAGGAGAGTTGAGAAGCATCATGGCGGATACACACAGCAGCAATAACCATGTTCCGGTTTTATTCTCATTCTCTGTGTTCTCACGGCCCTCGTCTGTGCCCGTGGGTTCTGGATATGAAGTGCTCATCCAGAAGTTTCTGTCCATTTACGGATATCAGATAGATGTTCATCGTAAATTGGTGCTTCAGTATTTCTCGGAGGAATGGGGTCAGTACATTGATTTACCGAAGGGATTCGTGATCTCAGAGAAATGTCGGCTGAGATTAGTACCTCTGCAGATGGATATCGCGACTTTGGGAAACCTCTCGCCGGCCACCACGGTTTTCTTCTGCTGTGACATGCAGGAGAGATTCAGACCTGCCATCAAATACTTCGGTGACATCATCAGTGTGGGCCAGAGGCTGCTGCAGGGGGCTCGTATTCTGGGTATTCCTGTCGTGGTGTCGGAGCAGTACCCTAAAGGTCTGGGCAGCACGGTGCAGGAAATGGATCTGACTGGGGCGAAATTAGTTTTTCCTAAAACAAAGTTTTCCATGGTACTTCCGGAGGTGGAGGCAGCCCTGGCTGAGATTCCAGGAGTCCGCAGTGTTGTGCTTTTCGGAGTTGAGACACACGTGTGCATTCAGCAGACCGCTCTAGACCTCATTGGAAGAGGTTTTGAAGTTCACATTGTTGCTGATGCCACATCCTCGAGAAGCATGATGGACAGGATGTTTGCACTAGAGCGGCTGGCGCGCACTGGAATCATCATCACCACCAGTGAGTCTGTTCTGCTGCAGCTCGTGGCGGATAAAGAACATCCAAAGTTCAAAGAAATCCAGAACATCATTAAAGCCAGCGCTCCAGAGTCAGGCTTACTGTCCAAGGTCTAAACACTGTCAAATGAAAGCTTCCTCTAAACTTCAATGATGAGCATGTCATATTGTTAATATTGATGAATTTTTCTCAGAACACACACATCGGAACATTTCACTGAAATCTGCTGAAATACTCACCAGCACACGTGCAAGTATTAAAAACGGTACAGCTTTTCATTCTCACAGGCAGTTAGTTATATTTGACGTGCGTAATTTAGGCTAAAGTCATGCGATCCAAAATGTATTTTTAGATGTCTGTTGTATCAGAGCAAAAGATCTGACCTGGATGCATCCGTCTGTATTAGTGAATTGGTGTCTCTATCTAGATGAGCAGAAGAGTCTAA

Function

symbol description
isoc1 Predicted to be active in cytoplasm. Orthologous to human ISOC1 (isochorismatase domain containing 1).

GO:

id name namespace
GO:0005737 cytoplasm cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000304_00728178_00731945.mRNA True 1403 mRNA 0.44 5 727956 732274

Neighbor

gene id symbol gene type direction distance location
CI01000304_00695426_00725459 SLC27A6 coding upstream 2497 694461 ~ 725459 (+)
CI01000304_00480135_00531529 NA coding upstream 195919 479781 ~ 532037 (+)
CI01000304_00453663_00453991 CTXN3 coding upstream 272716 453663 ~ 455240 (+)
CI01000304_00424703_00434890 PRRC1 coding upstream 292890 424703 ~ 435066 (+)
CI01000304_00370333_00419672 MEGF10 coding upstream 307201 370333 ~ 420755 (+)
CI01000304_00757894_00760456 NA coding downstream 25620 757894 ~ 760660 (+)
CI01000304_00772995_00827316 CHSY3 coding downstream 38759 771033 ~ 827608 (+)
CI01000304_00846138_00850133 NA coding downstream 113785 846059 ~ 850379 (+)
CI01000304_00884782_00917034 WRN coding downstream 152216 884490 ~ 917034 (+)
CI01000304_00933179_00942864 NA coding downstream 199524 931798 ~ 943865 (+)
G418156 NA non-coding upstream 34353 693350 ~ 693603 (+)
G418149 NA non-coding upstream 60473 666617 ~ 667483 (+)
G418148 NA non-coding upstream 63339 664260 ~ 664617 (+)
G418145 NA non-coding upstream 74053 653652 ~ 653903 (+)
G418142 NA non-coding upstream 83395 644260 ~ 644561 (+)
G418180 NA non-coding downstream 194231 926505 ~ 926772 (+)
G418192 NA non-coding downstream 312642 1044916 ~ 1045411 (+)
G418195 NA non-coding downstream 315124 1047398 ~ 1047599 (+)
G418196 NA non-coding downstream 315984 1048258 ~ 1048495 (+)
G418197 NA non-coding downstream 317345 1049619 ~ 1049865 (+)
G418059 NA other upstream 163505 558092 ~ 564451 (+)
G417987 NA other upstream 500103 226703 ~ 227853 (+)
G418116 NA other downstream 140396 872670 ~ 875249 (+)
G418981 NA other downstream 1360220 2092494 ~ 2093678 (+)
G420445 NA other downstream 3571062 4303336 ~ 4303832 (+)
CI01000304_05173869_05175309 NRARP, NRARP.L, NRARPA, NRARPB other downstream 4440949 5173426 ~ 5176791 (+)
G421162 NA other downstream 5508959 6241233 ~ 6242997 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_002010 isoc1 coding NC_007121.7 CM002894.2 16547259 ~ 16563953 (+)