CI01000304_00453663_00453991 (CTXN3)


Basic Information

Item Value
gene id CI01000304_00453663_00453991
gene name CTXN3
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 453663 ~ 455240 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000304_00453663_00453991.mRNA
ATGAGGTCCATGTGGAGGATGTGGGGCCCCTGCGTATGAGGATGCGCGAGCGTCTGCTGTGGGACGAGCCGCTGCAGATCTCCTGGCTGATGGAGGCCGAGCCGTTCACCTCCTCCCTCCAGACGGGGGGTCCTGTGGCGGGCGCCGGCATGACCCTGGAGCAGAAGACCACCTTTGCCTTCGTCATCTTCCTCTTTGTCTTCCTTTGCATGCTGATCGTGCGCTGCTTCCGCATCCTGCTGGACCCGTACCGCAGCATGCCCACCTCCACATGGGCAGATGGTCTGGACGGCCTCGAGAAGGGCCAGTTTGATTACACACTGGCTTAGAAGACACATACACGCACACACTCATGTGGTGATGAAGGCAAACAATCTTTTCAATCGAGCTCTGAACATCCTAAAGTCATACACAAACACATGAATATAGTAATTCTGCATATGAGCAGCTCCACCACAAGCTTGTAAAGATGATTAACACACACACACACTGTGCTCACTGCCATCCACATATACAAGATGTTGTTTCAGAAATTTAGTGTGCAGCGCTTTATTACAGACTGAATGGATGTTGAGCTCTTTATTAGTGCTGGGACACAGGGTAGCCCTCTTTTATATCCTCCCAAAAATCAAACCCTCATTTTCTCATATCTGTGCTGTTCTAACTGCCAAGTACAAATCTCTAGAAGAGAAGCTCTTTCTAAGACCGTTTATAAGCACTTCATAAACACTTATGACGCTTTTGTCAAAATAGCCTTAAAAAACATGCACTGTAATCGGCCACTGTCAGAGTTTACATGTTTCATTACTGGCAATTACTGCAGTGCTTCTGGTCACATCCTGAGCCTTTTTAGAAATCTTTAGGAGATATTAATACGAAGATAGAATAGGCTATTAGATGAGCTGTTGATTCATTGTATGTGCAATATGTAGGTCTCTTCACAGGTTCTGTACATTTGAAATCTCATTCATGGTAGGAATCGCAGGATTTGTCAGCCTTAGCACAACAAATACTCTGATCTTAGATCATGTCTATATCTGTATATTTATAGGCTGTAGTTTCGCAAGCCTTAACATGCGAAGCTGCCTTGAAAATCTTGAAAATCCATGTTCTAAGAGCTGATGATCATTGTGATAATCACACTGATCATGATGATAGTGTTAATCGGGGCTATGATGCGAATGCTCCTCTGCCCTGTCTATCATAGTTCATCTCATTGATGATTGTGATGGTTTTTGTTGCACTAATTCATTGTACCTGCTGTCACTGTGAAAGAGCCGACAAACTTTAGAGCACTTAGTAAAGGACATTTTATCATATGTGTCGTGATAAAGATTTAACAATTTAAATCTTAAAATTTAATCATTCAAAACAAAAGCTGCTCATTTGTTTTTGAAAGATTGAAGTATTGGGGTTAGAGTGAACAGGCGGTTTTCAATGTTCCCCTGCTGCTCTTTAGATGATACGAAGCACTAAACTGCTCTGTGTGTGACTTTAATGTCTTGAACAGTACAGTATGTGGAGCCTCAACTCAACTCGATGAGAATTTGTATTTAGACCTTCATACTGTTGTAAGAA

Function

symbol description
ctxn3 Predicted to be located in membrane. Predicted to be integral component of membrane.

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000304_00453663_00453991.mRNA True 1578 mRNA 0.43 1 453663 455240

Neighbor

gene id symbol gene type direction distance location
CI01000304_00424703_00434890 PRRC1 coding upstream 18597 424703 ~ 435066 (+)
CI01000304_00370333_00419672 MEGF10 coding upstream 32908 370333 ~ 420755 (+)
CI01000304_00315935_00342330 LMNB1 coding upstream 111140 314742 ~ 342531 (+)
CI01000304_00308220_00310793 NA coding upstream 142396 307673 ~ 311267 (+)
CI01000304_00292894_00306187 PHAX coding upstream 147184 292894 ~ 306479 (+)
CI01000304_00480135_00531529 NA coding downstream 24541 479781 ~ 532037 (+)
CI01000304_00695426_00725459 SLC27A6 coding downstream 239221 694461 ~ 725459 (+)
CI01000304_00728178_00731945 ISOC1, ISOC1.L coding downstream 272716 727956 ~ 732274 (+)
CI01000304_00757894_00760456 NA coding downstream 302654 757894 ~ 760660 (+)
CI01000304_00772995_00827316 CHSY3 coding downstream 315793 771033 ~ 827608 (+)
G418047 NA non-coding upstream 12791 440584 ~ 440872 (+)
G418023 NA non-coding upstream 172637 279893 ~ 281026 (+)
G418024 NA non-coding upstream 175681 277261 ~ 277982 (+)
G417901 NA non-coding upstream 185453 168520 ~ 268210 (+)
G418050 NA non-coding downstream 14975 470215 ~ 470572 (+)
G418056 NA non-coding downstream 23439 478679 ~ 478899 (+)
G418004 NA non-coding downstream 66444 521684 ~ 526522 (+)
G418003 NA non-coding downstream 95033 550273 ~ 551981 (+)
G418058 NA non-coding downstream 102351 557591 ~ 557792 (+)
G417987 NA other upstream 225810 226703 ~ 227853 (+)
G418059 NA other downstream 102852 558092 ~ 564451 (+)
G418116 NA other downstream 417430 872670 ~ 875249 (+)
G418981 NA other downstream 1637254 2092494 ~ 2093678 (+)
G420445 NA other downstream 3848096 4303336 ~ 4303832 (+)
CI01000304_05173869_05175309 NRARP, NRARP.L, NRARPA, NRARPB other downstream 4717983 5173426 ~ 5176791 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00012461 NA coding CM030138.1 CM030138.1 18568849 ~ 18569085 (-)