CI01000304_00772995_00827316 (CHSY3)


Basic Information

Item Value
gene id CI01000304_00772995_00827316
gene name CHSY3
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 771033 ~ 827608 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000304_00772995_00827316.mRNA
GTATAAATAGGGAAAATTGGGTCAAGTTGTCACAAGGCCTTTATGTAAGTAACTCATTTGCCATGCATTGTGGGGAACAAATCTGGTTAACAAGGACACCAAAGCCTGAACTAAAAAAAAAAGAAAAGAAAAAAAGAAAAAAGTAATGAGTAATGACCAGAGAAAGTGAGAGCTTAAAAAAGTAAACCAGATAAGATGCATAGCCTACTGTCAAGACAAAACAAAAATTTTCTTAAAATAATTTTTCAAAACAAACAAACAAACAAACAAAAAAGACTAATGTGACATCCATGTAGGTTATTTACATGGTGGTTCAAAGAATACCTTTGTATATTGAGGTATTTGTTTGGAAAATGCTTTTACATTCGCTGTACATCTGGGTAATGAAGATCTTAATCGCTGGCAAATGACAAGATGGATTTCAGGCTAGTTTTCAAAGTAAGGTAGGTAAATATTCCACTTTAGCAGACAGAAAATTTGTATCATGCGACATGATCACTGAAATATTGACAGGAACATTGAGTGCTGGGTAAAGGCTGGAATACAATACACTACACAACTTTTAAAATCTGAACAGATTTTCGGTGAACAATACCCGGATGACGTACTGCATGGGATTCTAAAGTGTGCAAACAGTGGACACTTTGCTATCCCATAATACTATGGAAGCTAAGGAGTCATAAATACTAACTAATACAAACTAACTATGAACTCTTTTCGTACTTACTTACAAAGAAAGTTGTTCCTTGTGCTTAAATTGTTTAACAATACCAAAGTAAAGAATTTTCATGTTGGATGAATGTTTAATGTCTTTAAACAATGTATTTATACAACATACGTGCTACAGAGCACTTCATTAACAGTCAAGAAGTTCCTTATCAGTTTCTGTAGGCTACATGATGAAAATATGGCAGTTCAGACGCAGGTATTGACAGTTTCCAAACAGGTTCCCCAAATGTTTTAGATAGTCCCTCCCCAAATCACACCACTGGCTCAGGCAGTTTACAAGATTTTTTTTTTTTTTTGGCAGGCCACTCAGTCAGGTGTAATTTGTCATTACATGTGTTGGTATCTGTCAGATAGAGGCTAAATGTTATTCATAATATTAAAACATCACTTACAACTTTATTTTTATTTATTTATTTATTTTATCTATTGGGTACACTTAGTCTTGTGACTTTTAGACATCGTGTATGTAGTATATGTTTCAATCAAATTCAAATTCAGAGTCAATACACCGACGAAGCCCAGCGCAGCGAAATTCCTGCCTTCTTTGGATTTCCCTGCAAACGTCAGCCAGGGAAGAGAAAGCGCAGCTGTTTCGCTCCGCCCCGTGACTGAGGCGAAGCAAAGAGCGTTTGTCCCGTTACATCAGTGCTCCCAGAGACTTAAACCCGGAGAAATGCTTGAGAGACGAGGAGAAAAAGTTCCGTTTCTTCGCGTCAAACTGTGAGGAAAATGGCGAGTCTGTGGAAACTGAAGCGGCTGAATGAGGAGAAGGGTTACGTGAATGCAGTATGTCTTTATAGTGAGGTGAGGAAACAGTGTCTTCAGTGGAGAACGGCACAACGCAAGCCTTCATTGCTTGGAAAAGGAAGCGTCAACTTTATAAACGTTACAGTGTGACGCGTTTTTACTTAAGTAATGTGTATTGTACGCGCCGTTGGCAACTACCGAAAGAATTATATTAAACTCTCCTCGCCGAGCAAGAGAGAATTGACAAGAGAGCTGCGATATCAACACTTGGATGGATTTTAACCGATAAATATTGTGATCGACACATTTGAAGGATGTTTACCTCACGTGTAACGGGACAACACTCACCTTCGGGTCGCGCGACGTGCACGCGAACGCACTTTGCAGATGTTAGATAATCACAGTCGTCAGTCATTTGACTCCAAAATGCACATATCAGTTTGAGGAGACTGTTGTATATGAGTAATCTGCTGTATTAACTGTGCGATGGCCCTCAGGTCTAGAAGACCGTTGGTGAGCGTCATCGTGGGGGTTTTTCTGGGCTTCACAGCCGCGTCGTGGCTGGTTGTGCCCAGAGTTGTAGAAATCAGTGCGAAGAACAGAAGGTCTTCAGTGTGTACATACTACAGTAACGCCAGGGCTCAGGCTAAAGTTTCAGACACCGCCCACAGTACCTCATCAACCAGTGGCAGACACAAGCAGCTGCAGCCAGTCTTCTCCAGCCAGGAAGGCAGTGATGAAGGTGAAGAGGAGCTTGATAGGACAGGGAACAGCAGTGGAGCGGGACCTGTACCTCCAGCTAATAGTTTCTTGTATGTGGGGGTCATGACAGCTCAGAAGTATCTGGCCTCCAGGGCCGTGGCTGCCTACAGGACGTGGACCCCCAGCATCCCCGGGCGGGTGGAGTTCTTCTCCAGTGAGGGCTCTGAGAAGGTGCCTCTGCCAATTCCAGTGCCTGTCATCTCGCTGACAGGGGTGGACGATTCATACCCTCCTCAGAAGAAGTCTTTCATGATGTTGAAGTACATGCACGACCATTTTTTGGATAAATATGAGTGGTTTATGAGGGCTGATGACGATGTCTACATCAGAGGTGAGAAGTTGGAGTTGTTTCTTCGCTCTCTTAACAGTAGTAAACCGCTGTATCTGGGTCAGACGGGTCTTGGTACCACAGAGGAGCTGGGTAAACTGGCCCTGGAGCCTGGAGAGAACTTCTGCATGGGTGGTCCAGGGATGATCTTCAGCCGGGAGGTTCTCCGCAGGATGGCACCTCACATCGGGTCCTGTCTCAGGGAGATGTACACTACTCATGAAGATGTGGAGATAGGACGCTGCGTCAGGCGTTTTGGAGGGACCCAGTGCGTCTGGTCATACGAGGCTCTTAGGGGGCTAAGGGTCGTTAGGGGATCCCCGATTAGCTCTGTAAGTGATGTAGAAGTGCCTAAACACTGCAGGGAACTCGCTTCATCTCGTTGGAGGAATGAGGAAGATTGTGATTGCTCACGTCTGGAGTTCTGGTGTAAAAACAGGGGAATTACACCACGGTCCAGTGTTAGTCAGTCACTCAAACAGCAACACAACATCATTAGTGACGTGCTGGAAGAAGCTTTCAGAACAAAATGTATGAGTACAGGACAGATGCAGCAGTTGTTCTATGAGAACTATGAACACAACAAGAAAGGTTTCATCCAGGATCTTCACAGTAGCAAGATCCACAATGCCATCACGTTGCACCCCAACAAGCATCCAGCTTATCAGTACCGGCTGCACAGCTACCTGCTCAGTCGCAAGATCTCTCAGCTGCGGTACCGCACTATTCAGCTGCACCGTGAAGGTGTCACCATGAGCCGTCTCAGCAACACTGCGGTGCAGTGGGAGGACCAGCTACTGGGGGCGCCACCTTCCTACACACGCTACCGGCCCGCAGAGCGGGAAGACGTCATCGAGTGGGATTTTGTTACCGGTAGGCACCTGTTTTCTACCAGTAAGAAGCAGATGCCTCGTCAGGGCCTTGGAAACCTGGTCCGCTCAGCACTGGAAGACACAGTGCTTCAAGTGATGGAAATGATCAATGAGAACTCCAAAACTCGAGGCCGTGTCATAGACTTCAAGGAAATCCAGTACGGCTATAGAAGGGTGGATCCACTTCACGGTGCCGAATACATCCTGGACCTTCTGCTGCTCTACAAGAAGCATAAGGGTAGGAAAGTGACAGTGCCAGTACGGAGACACGCTTACCTTCAGCAGTCTTTCAGTCGGCCATTCTTCAGCGAGGCAGAGGAACTGGATGTTGCCGAACTAGAAGGCACCATCAATGGTGACTCTCGTTCACTGTCTTTCCTCTCCAACTCGCTCAAGATCTTCTCTTCCTTCCAGATCTCAGAGTCCACAAAAGTCCAGAGTCAGACAAAAGTCCACTTCCTCGTACCGCTCACCGGTCGCTATGAAATCTTTGTACGTTACATGGAAAACTTTGAGAGAATCTGCCTGATCCCCAACCAGAACGTGAAACTGACCATAATCCTGGTTGACAATGATACAAACCAGGATAAGGAGAGACACCTAGAGCTGATAAAGGAATATCACAACAGATATCCTAAAGCAGACCTGTCTATCATACCTATGACAGGAGACTTCTCTCGAGGACTGGCCCTTGAGATGGGCTCCTCTCAGCTGAGGAACAACTCACTGCTGTTTTTCTGTGACGTGGACCTGGTCTTCAATACTGATGCCCTCCAGAGGTGTCGTGACAACACCATTGAAGGACGTCAGGTGTATTTCCCTGTCGTCTTCAGTCAGTATGATCCCAAAATTGTCTATGCTGGTGACCCTCCTGAAGACAGCAACTTTGTCTTTACCAAGAAGAGTGGATTCTGGCGAGATTATGGATTTGGTATCAGCTGCATATTCAAAAGTGACTTGCTTAGAGCTGGGGGGTTTGACACCTCAATACAAGGCTGGGGTTTAGAGGATGTTGATTTGTTCACTAAAGTCATCAATTCTGGCTTGAAAGTGTTTCGCTCTCAAGAAGCAGGAAGTAAATCTGTCTGTCCATTTAAAAACCAGATCGTACAGCATATCCGCTTTGTGTTCATGTTTCTCAGCCAATTGATCTCCTATTGTTCCTCTGCGCTGCTTCTGCTGAGTTAAGCGGTTTCACATCATTATCCACATTATAAAGCTCATTATGCAAAAGGAGAAGAGGGACTGAACATGAGCTTTGCTGGAGAGCTGCTTCTTTACTGTGCACCTTAAATGTACAGTATATGTTACATTAGCATTACTGTAATTTTGTGACTAAGAATTAGTGTCATTCTTTTCATTCATAAACAAGACATTGTAAATCAATCATTTGTCTTAGAGAAAGATTGGGAACATTTTTTCAACCTCATTTTCACTCTGAAAATCTATCAAGACCAAGAGTGACACAGGTAAGTAAATA

Function

symbol description
chsy3 Predicted to enable glucuronosyl-N-acetylgalactosaminyl-proteoglycan 4-beta-N-acetylgalactosaminyltransferase activity. Predicted to be involved in chondroitin sulfate biosynthetic process. Predicted to be located in Golgi cisterna membrane. Predicted to be integral component of membrane. Is expressed in several structures, including cranial cartilage; inner ear; lateral mesoderm; notochord; and tail bud. Orthologous to human CHSY3 (chondroitin sulfate synthase 3).

GO:

id name namespace
GO:0030206 chondroitin sulfate biosynthetic process biological_process

KEGG:

id description
K13499 CHSY; chondroitin sulfate synthase

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000304_00772995_00827316.mRNA True 4918 mRNA 0.45 5 771033 827608

Neighbor

gene id symbol gene type direction distance location
CI01000304_00757894_00760456 NA coding upstream 10373 757894 ~ 760660 (+)
CI01000304_00728178_00731945 ISOC1, ISOC1.L coding upstream 38759 727956 ~ 732274 (+)
CI01000304_00695426_00725459 SLC27A6 coding upstream 45574 694461 ~ 725459 (+)
CI01000304_00480135_00531529 NA coding upstream 238996 479781 ~ 532037 (+)
CI01000304_00453663_00453991 CTXN3 coding upstream 315793 453663 ~ 455240 (+)
CI01000304_00846138_00850133 NA coding downstream 18451 846059 ~ 850379 (+)
CI01000304_00884782_00917034 WRN coding downstream 56882 884490 ~ 917034 (+)
CI01000304_00933179_00942864 NA coding downstream 104190 931798 ~ 943865 (+)
CI01000304_00962923_00975418 NA coding downstream 135145 962753 ~ 975644 (+)
CI01000304_00983004_01018406 NRG1 coding downstream 155304 982912 ~ 1018693 (+)
G418156 NA non-coding upstream 77430 693350 ~ 693603 (+)
G418149 NA non-coding upstream 103550 666617 ~ 667483 (+)
G418148 NA non-coding upstream 106416 664260 ~ 664617 (+)
G418145 NA non-coding upstream 117130 653652 ~ 653903 (+)
G418142 NA non-coding upstream 126472 644260 ~ 644561 (+)
G418180 NA non-coding downstream 98897 926505 ~ 926772 (+)
G418192 NA non-coding downstream 217308 1044916 ~ 1045411 (+)
G418195 NA non-coding downstream 219790 1047398 ~ 1047599 (+)
G418196 NA non-coding downstream 220650 1048258 ~ 1048495 (+)
G418197 NA non-coding downstream 222011 1049619 ~ 1049865 (+)
G418059 NA other upstream 206582 558092 ~ 564451 (+)
G417987 NA other upstream 543180 226703 ~ 227853 (+)
G418116 NA other downstream 45062 872670 ~ 875249 (+)
G418981 NA other downstream 1264886 2092494 ~ 2093678 (+)
G420445 NA other downstream 3475728 4303336 ~ 4303832 (+)
CI01000304_05173869_05175309 NRARP, NRARP.L, NRARPA, NRARPB other downstream 4345615 5173426 ~ 5176791 (+)
G421162 NA other downstream 5413625 6241233 ~ 6242997 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_002013 chsy3 coding NC_007121.7 CM002894.2 16592851 ~ 16748593 (+)