G420221


Basic Information

Item Value
gene id G420221
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 3387678 ~ 3389213 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU482644
TGAAACATTGTTCAATGTTTATTAAACTTTGTTAAACACCTTTGCTGAAGCATTGTCTGTTTTCTTGCAGTTTTTTAGTCTTAAAATGTCTTAAATTTTACAATATTGAGGCTTAAAGGTCAAATACTCAACAATTTAATTGATGGGGTCTTACTTACAACAATAAACGTTAGCATGTTATTTCAGCCATACTGATGTCTAGAGAGAAAGCCATTTTACCTGTCCCACTTTCTGTGGAATAAAGTCCTGGTCAGATGTATTACAGTAGCTGCTTTCTGTCTAAACAAAAGGAAACTTAAATGGTTCCTGCAATAATGTGTTCAATTACCCACCATATTCCTGCCTAAATTTAACATCTGCACTGGACAAAATATTTAGCACTGCCATTCATGCTTAACTTGAACAAGAAAAAATATTCATTTAAAATATGAAATAAATGTCATAAAAACCATTAAATTGAACTTTCTCATGCATGTCAACACATTGTTACAACACTAATTTTGTGTTTTAAAACAAATTATAAGTAAACTGTTTGTGTTTCTTGAAAATTATTGCTTCAATTAATTTTTTGGCAGATAGAACCTTATAATTCCAAGCGAAAAGTGTTTTTTTAGAATTAGAAGGTTCTATCTGCATTTGAACCGTTCCAAAAATCCCCATTTACAAATCTGAGAGGATTTTGATATTGTACATTTAGAATAAATTTAGGGTCCCTGTCATTTTCATGTTTGAAAGAAACTTGTTCCCCATATAATTTTTGCTATATGGAATGCAAAAACTTTGAAGCTCAATATCTCAAAACTGCTCAGAACGCAGATAGAACCTTATAATTCCAAGGGGACGACATTACATGCTAGAGGAGTGGGTGGTTCATGGGGGCAGACCCGATGAAGAAGCTCCCACTGTGACCCTCAGATCTCCCAGAGTGCTAACCAGACCAGCAGCTTTAGAAGCTGCGGGCGGCTGGGTAGCAACAGAGGGGACTCGTACCTCTGCATTGAAGAAGGAGAGTCACGATCGCAACGCCAACATGGACATGCTCTCGCAATGAGGGCACATGCCATCCACGAGCGCCGACTCAGCATGCTGTTTGCCCAGGCATGTGAGACAGCGACCGTGGCCGTCAGATGAGGTCAGGAAACGACCGCATCCAAAAACACACGGGCGAAAAGACATCTTGAAAAAGACACTGAACTCATGTGCTTGCTCTTTTAGAAACTGCTCTTTCAGCTGAAGCGCACAGGCATGTGTGCCGCACCGTCCTGTGCCACACACACACTGCTGAATGTGCCTTCCCACCAGCCAGAGAGAGATCCACGAGCTGCAGCCACCGGAACAAAACAATAAAAACAATGAAAATTGCTGTTGAAGGAGATCACTCCAAGCAATTAAAATTGCTGTTTTACTTTTAGTAGAAATTTGCACTCTTTTCTTAAAGGTGAGAGAGAGAAACGATCAGACAACCGATCGGCTCCGAAGCAAAAGTACGAATGGAAGTGAGTATGCCGGTCCTATTTATACTCAGATGCCGGGGGT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU482644 True 1536 lncRNA 0.40 1 3387678 3389213

Neighbor

gene id symbol gene type direction distance location
CI01000304_03305219_03313206 NA coding downstream 74280 3305219 ~ 3313398 (-)
CI01000304_03268621_03269674 NA coding downstream 117436 3268621 ~ 3270242 (-)
CI01000304_03214897_03241215 MUSK coding downstream 146463 3213483 ~ 3241215 (-)
CI01000304_03158811_03160301 NA coding downstream 227377 3158493 ~ 3160301 (-)
CI01000304_02900497_02900924 NA coding downstream 485576 2899799 ~ 2902102 (-)
CI01000304_03398119_03398652 NA coding upstream 8826 3398039 ~ 3400370 (-)
CI01000304_03408538_03449725 CNTFR coding upstream 19043 3408256 ~ 3449901 (-)
CI01000304_03483866_03493010 NA coding upstream 94627 3483840 ~ 3493010 (-)
CI01000304_03529068_03531228 NA coding upstream 139314 3528527 ~ 3531304 (-)
CI01000304_03763183_03764351 NA coding upstream 373942 3763155 ~ 3764411 (-)
G419842 NA non-coding downstream 301053 3085419 ~ 3086625 (-)
G419840 NA non-coding downstream 308076 3079366 ~ 3079602 (-)
G419783 NA non-coding downstream 423875 2963590 ~ 2963803 (-)
G419777 NA non-coding downstream 445731 2941699 ~ 2941947 (-)
G419756 NA non-coding downstream 493189 2889285 ~ 2894489 (-)
G420150 NA non-coding upstream 30709 3419922 ~ 3478109 (-)
G421465 NA non-coding upstream 370205 3759418 ~ 3759745 (-)
G421471 NA non-coding upstream 399506 3788719 ~ 3788926 (-)
CI01000304_04007023_04008270 YEE9, IER3IP1 non-coding upstream 613826 4006069 ~ 4009056 (-)
G421655 NA non-coding upstream 718050 4107263 ~ 4107557 (-)
G419354 NA other downstream 1121437 2262502 ~ 2266241 (-)
G419353 NA other downstream 1151572 2229384 ~ 2236106 (-)
CI01000304_04263955_04264962 NA other upstream 874532 4263846 ~ 4265201 (-)
CI01000304_04661808_04672936 PPWD1 other upstream 1272603 4661766 ~ 4672947 (-)
CI01000304_06480836_06483554 SUB1L2, SUB1A, SUB1 other upstream 3088238 6480743 ~ 6483986 (-)
G422354 NA other upstream 3241873 6631086 ~ 6631499 (-)
G422378 NA other upstream 3355466 6744679 ~ 6783046 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
rainbow trout (Oncorhynchus mykiss) LOC110486279 LOC106605442 misc NC_048566.1 CM023220.2 29685855 ~ 29697686 (+)
mexican tetra (Astyanax mexicanus) G111119 NA non-coding NC_035909.1 CM008312.1 14450107 ~ 14495692 (-)