CI01000306_01792788_01804803 (ASPSCR1)


Basic Information

Item Value
gene id CI01000306_01792788_01804803
gene name ASPSCR1
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000306
NCBI id null
chromosome length 11491657
location 1792788 ~ 1804803 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000306_01792788_01804803.mRNA
ATGTCGCATCATGTTGAGAGTGAGGTTCTTGAGGATGTGTGTAAGAAGCACGGCTTTGATCCAGATGAGCATGGACTCAAGTTTCAGAGGAACATTCTAGATTTGACTCTGCAGTGGCGATTTGCCAGTCTGCCAAATAATGCCAAGCTGGAGATGGTGGCGTGTTCACGGCAGCAGGCGGGAGCCGAGAGCGCGGTGCGGATCGCCCTGCAGATGGAGGACGGCTCTCGTCTTCAGGACTCTTTCTCTAGTGGACAGACATTATGGGATCTACTGACCCACTTTCCTCAAACCAGGACGTCTGATCTGGAGGCGTCTGGACCCACACCAGTGTGTGTTTACATGAGAGACGAGATCAGCGGTGAGGAAGCGCTGAAGAAGACGACTCTAAAGTCTCTGGGCCTCACGGGAGGAAGTGCCATCATACGATATGTGCTGAAAGGCTCCAGCTCTTCATGTCCTGGTGCGGACATGGATGCGGTCAAGACAACCGTATCACAGCCGCCTCTACCAGAACCATCAGTCCCTGCTCCCATTAAAACCCCAGCTCCGCCCACTGAGGTCGCCGCCCCATTGAACCATCACCCTGTCAAAAAGGAAGAGGAGAAGCCGAACACGAGCCAAGAGCAATCAGTGCGGCCTAAAACTAAAGCCGCTGGTGAGCCGCAGAAGTCCCAGCTAATGACAAAAGAGGATGACGAGCGACCGGGGACGTCCCAACAGTGCCATGGCTCCGCCCCCTCAGCCCCGCCCACTAACTTTGTGCCATTTGCGGGAAGCGGACAGCGTTTGGGAGGACCTGCGGCCACTGGACTGAAGGGCTCGACCTCATGGTCGTCTTGCGTGTCCGGCAGCCCTCCCAAAGCCAAAAAACCCAAACCCAGCAGTGAAATCAAGAGATCAGCCAGTGCCAAACAAGCGACGAGGGCTGAAGAGGAAGCAGATGAATATCTGGAGCCGGTCGACAGGGAGCCGCTGGTCTTCCATCTGGATTCAGGAGCCCGTCGCCATGACGACATAGAACTTCCCGACGAGTTTTTTGAGGTCACCGTGGATGACATTCGGAAGAGATTCGCCCAGCTGAAGAGTGAGAG

Function

symbol description
aspscr1 Human ortholog(s) of this gene implicated in alveolar soft part sarcoma. Orthologous to human ASPSCR1 (ASPSCR1 tether for SLC2A4, UBX domain containing).

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000306_01792788_01804803.mRNA True 1094 mRNA 0.55 9 1792788 1804803

Neighbor

gene id symbol gene type direction distance location
CI01000306_01775235_01776152 NA coding downstream 16356 1775197 ~ 1776432 (-)
CI01000306_01756353_01763570 PYCR1B, PYCR1.L, PYCR1, PYCR1A, PYCR2 coding downstream 28542 1756175 ~ 1764246 (-)
CI01000306_01723684_01726043 MAFGA, MAFGB, MAFG coding downstream 66745 1717933 ~ 1726043 (-)
CI01000306_01665458_01676209 NA coding downstream 116565 1664797 ~ 1676223 (-)
CI01000306_01633237_01635512 HRASLS coding downstream 156015 1633073 ~ 1636773 (-)
CI01000306_01826418_01844251 MFN1B coding upstream 21294 1826097 ~ 1844251 (-)
CI01000306_01859514_01870761 NA coding upstream 54202 1859005 ~ 1870822 (-)
CI01000306_01905901_01906725 NA coding upstream 100895 1905698 ~ 1907020 (-)
CI01000306_01927392_02010649 FLNB coding upstream 122530 1927333 ~ 2010774 (-)
CI01000306_02022802_02080261 SLMAP, SLMAPA coding upstream 217999 2022802 ~ 2080261 (-)
G431913 NA non-coding downstream 6532 1785585 ~ 1786256 (-)
G431747 NA non-coding downstream 38284 1753414 ~ 1754504 (-)
G431757 NA non-coding downstream 52168 1732745 ~ 1740620 (-)
G431746 NA non-coding downstream 60363 1727489 ~ 1732425 (-)
G431737 NA non-coding downstream 86717 1705349 ~ 1706071 (-)
G431916 NA non-coding upstream 2042 1806845 ~ 1807068 (-)
G431918 NA non-coding upstream 5040 1809843 ~ 1810059 (-)
G431751 NA non-coding upstream 51994 1856797 ~ 1898332 (-)
G431933 NA non-coding upstream 94062 1898865 ~ 1899107 (-)
G431777 NA non-coding upstream 97845 1902648 ~ 1924550 (-)
G431814 NA other downstream 480354 1311702 ~ 1312434 (-)
G431706 NA other downstream 629450 1163027 ~ 1163338 (-)
CI01000306_00482506_00494090 PFKLB, PFKL other downstream 1309139 482482 ~ 494090 (-)
G432022 NA other upstream 1195433 3000236 ~ 3003891 (-)
CI01000306_04544349_04545034 NA other upstream 2737920 4542723 ~ 4545244 (-)
G433450 NA other upstream 3556840 5361643 ~ 5383763 (-)
G433670 NA other upstream 4236211 6041014 ~ 6041283 (-)
G433985 NA other upstream 4391304 6196107 ~ 6197210 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_003758 aspscr1 coding NC_007122.7 CM002895.2 45255774 ~ 45275209 (+)