XLOC_003758 (aspscr1)


Basic Information

Item Value
gene id XLOC_003758
gene name aspscr1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 45255774 ~ 45275209 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00007233
ATGGCGGCGAGCGCTTCGGCTGTGTCAGTTTTAACTCCTAATGGCAGAAGACAGACTGTCAAAGTGTCTGCAAACACTCCTTTGCTGCAGGTTCTTGACGATGTGTGTAAGAAACACGGGTTTAATCCTGAAGAGCATGGGCTCAAGTTTCAGAGGAATGTTCTAGATCTGTCTCTGCAGTGGCGTTTCGCTGGTCTGCCCAACAATGCTAAGCTGGAGATGGTGTCGCGGTCACGCCAGCAGGCGGCTGCAGAGAGTGCGgtgcgAATCGCGCTGCAGATGGAGGACGGCTCTCGTCTTCAGGACTCGTTCTCCAGTGGACAGACCTTATGGGATTTACTGAGCCACTTTCCTCaaaccaggtgtTCAAGCCTGAATGTGGTGGAtaagacgtgtgtgtgtgcgtgtgtgcgcgtgcatGTCAGTGGTAAGGATGCGCTGAAAAAAGCCACACTGAAGTCTCTGGGTCTCACAGGAGGAAGTGCCATCATACGATATGTGCTAAAAGGCTCCCCGTGTCCTGATGCACCAGTGGATGCGGTTGCCATGCCAACAGATGCTGTTGCCAAGATAACCAAATCACAGCCGCCACCACCAGAAGCAGCACCCCTCCCTGCGGAGCCCGCCCCTGTTCCTATGGAAACCCCTGCTCCGCCCACTGAGGTCACCACCCTTCTAAACCATCATCTGGTCAAACAGGAAGAGGTGGAGCCAAGCACGAGATCAAAGCAAACAGTGCGGCCCAAAACCCAGGAGTCGGCAGAGGATGACGAGCGGCCAGGGCCATCCAATCAGTGCCAAGACTCCGCCCCCTTGGTCACGCCCACTGATTTTGTACCATTCTCAGGCAGTGGGCAGCGTCTTGGAGGACCAGGCGGAGTGAAGAGCTCCACATCATGGACATCAGCATGTGTGTCCGGCAGCCCACCCAAAGCCAAAAAACCCAAACCCAGCCATGAGATTAAGAGATCAGCCAGTGCCAAACAAGTGAAGAGGGATGAAGAGGAGCCAGACCAATATCTGGAGCCGGTGGACAGGGACCCGCTGGTGTTCCACCTGGACTCTGCATCCCATCGCCAGGAGGACGCAGATCTCCCCGACGAGTTCTTCGAGGTGACGGTGGACGATATTCGCAAGAGATTTGCTCAGCTAAAGAGCGAGAGgaagaGTCTTGAAGAAGCTCCTCTGATGACTCAATCTCTGAGAGAGGCTCAGACCAAGGACAAGCTGGAGAAATACCCTaaaGTGGCGTTGAGGGTTCAGTTTCCAGACCGTCATGTTCTTCAGGGCTTCTTCAGGCCTCTAGAGACAGTCTCTGCTCTCAGAAGTTTCGTCAGATCTCACCTGCAGGACCCACACATGCAGTTTTACCTGTTTGTTGCTCCACCCAAAACCATCCTCGACGACCCAAATGTCACACTATTCCAGgcgAGTCTGTTTCCCGCTGCTCTGGTGTATTTCGGCTCAGATGCGTCTGCAGaTGGTTTCCTGCGCTCTGATCTCCTGGATGTCAGTGTCTCCGCCCTGCAGGCTGATCAGCTCATAGCAGGCTGTATGCCTCGCTCTCCTCCTCCTGCGATCTCCTCTTCTTCTGCTCCTCCACACCTCCCGCAGTCAGCTCCAGAGTCCTGTCCTTCCTccggccagcagggggcagtagAGGAACACTGTGACCCACACACCGCCGCAGACCGACCCAACCGCACCGACAGCGCAAAGGTGCCAAAGTGGCTCAAGCTGCCAGgTAAAAAGTGA

Function

symbol description
aspscr1 Human ortholog(s) of this gene implicated in alveolar soft part sarcoma. Orthologous to human ASPSCR1 (ASPSCR1 tether for SLC2A4, UBX domain containing).

GO:

id name namespace
GO:0008150 biological_process biological_process
GO:0005575 cellular_component cellular_component
GO:0003674 molecular_function molecular_function

KEGG:

id description
ko05202 Transcriptional misregulation in cancer

ZFIN:

id description
ZDB-GENE-050417-31 Human ortholog(s) of this gene implicated in alveolar soft part sarcoma. Orthologous to human ASPSCR1 (ASPSCR1 tether for SLC2A4, UBX domain containing).

Ensembl:

ensembl_id ENSDARG00000105321

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00007233 True 1755 mRNA 0.55 18 45255774 45275209

Neighbor

gene id symbol gene type direction distance location
XLOC_003756 tmc6b coding upstream 11133 45233348 ~ 45244641 (+)
XLOC_003757 CABZ01078080.1 coding upstream 19040 45234480 ~ 45236734 (+)
XLOC_003755 tmc6b coding upstream 24575 45219558 ~ 45231199 (+)
XLOC_003754 NA coding upstream 36387 45212765 ~ 45219387 (+)
XLOC_003753 tk1 coding upstream 97718 45153104 ~ 45158056 (+)
XLOC_003759 pycr1b coding downstream 11702 45286911 ~ 45298524 (+)
XLOC_003760 mafgb coding downstream 24238 45299447 ~ 45328509 (+)
XLOC_003761 NA coding downstream 56192 45331401 ~ 45335873 (+)
XLOC_003762 si:ch73-100l22.3 coding downstream 64697 45339906 ~ 45351824 (+)
XLOC_003763 NA coding downstream 79646 45354855 ~ 45356339 (+)
XLOC_003369 CR854846.2 misc upstream 29132692 16122786 ~ 16123082 (+)
XLOC_003318 CR450764.6 misc upstream 32543778 12711700 ~ 12711996 (+)
XLOC_003317 CR450764.16 misc upstream 32561511 12693967 ~ 12694263 (+)
XLOC_003316 CR450764.11 misc upstream 32570175 12685304 ~ 12685599 (+)
XLOC_003315 CR450764.18 misc upstream 32575746 12679732 ~ 12680028 (+)
XLOC_003752 NA non-coding upstream 111934 45136015 ~ 45143840 (+)
XLOC_003748 NA non-coding upstream 344555 44907969 ~ 44911219 (+)
XLOC_003747 FO744859.1 non-coding upstream 404181 44851474 ~ 44851593 (+)
XLOC_003765 CU459093.1 non-coding downstream 114168 45389377 ~ 45390076 (+)
XLOC_003766 NA non-coding downstream 137614 45412823 ~ 45413797 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000306_01792788_01804803 ASPSCR1 coding CI01000306 null 1792788 ~ 1804803 (-)