XLOC_003754


Basic Information

Item Value
gene id XLOC_003754
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 45212765 ~ 45219387 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00008717
ctaaaCTACACTACACAGTTTGGGTGTATAAGTGCATAAGCATATAGTGTGTAATTTAAGACGCAGCTACAATCACCTTCAATTCTATGGATCATGTGTCTCCATGGCAACAGTCCTGACACGGCCCTGCCCACTTGCTCTTTTAAGCGACGCCTTGTGGTCTGCTGGCTCCGCCTCCACGCGTCCCAGGAGCCAATGCTGCGTTTCTGAAGGCAGACGGGCAGGTTTCTGAGCGGCACATTGGGGTTCCAGCAGATTCTGTCCAATCGCAGCCTCTCGTTCTGATCATGTGTGATGTCATCAGCGTGTGCTCGACGATGAGTCTGTGTGCTCGGCAACAAGCCGAAGATCTCCGTCTGATAATATTCACAGGAGTCGCTGGACAGATCCGAGCTGTAGCTCTCAtctgcacaaaaacaaaacacaaacatagGAAGTCATGTGATCAGCAAGTGGGTGTCGCATCGCATCATCAGCCCAACTCTGACTTTCAGACGACTTATAATATCTGCACAATCAAGacatgaagGCATGCAGCTGTTAATGGAAAAGCATGACGTCATCACCAAAGAACCTCATGAAACAAATCATTCTCAAACCACCAGAGAGAAGCCCAGTGCTGTTTGCAGACTCACATCCTCTGTGTGTCAATCATGATTGACTTTTCCTTCAGTGAGGTCTGAAGACAGAAACTGAAGGACCGAGATGAGTGATCAGACCACAGGAGCATCACATCCTCTGAACTGAACTCCACAAACACTGACTGATCTCTGCTTATAGCTCATCTCATTCATTATACCTCCACTGTCCATAATCAGAGATTGATTAAACATCATGCTGAGTTATAATCAAACTTTTATCAGAGTAGTATGAGTTCAGTCAACTTAACAATGAGTCGGCTCGTACCATTTTAAGTGAGCGCGGTAATCCATATATcttagtgttatttatttatgtaacgtAATGATTAGTCTACTTAACACTCATTACATGCTTTgcctgtttataaaacatcacagtgtttttgtattaaataataaatcatgtCTCCCCCC

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00008717 True 1055 lncRNA 0.44 4 45212765 45219387

Neighbor

gene id symbol gene type direction distance location
XLOC_003753 tk1 coding upstream 54709 45153104 ~ 45158056 (+)
XLOC_003752 NA coding upstream 68925 45136015 ~ 45143840 (+)
XLOC_003751 ogal coding upstream 86264 45110865 ~ 45126501 (+)
XLOC_003750 si:dkey-93h22.8 coding upstream 104852 45092866 ~ 45107913 (+)
XLOC_003749 cfap410 coding upstream 276445 44932852 ~ 44936320 (+)
XLOC_003755 tmc6b coding downstream 171 45219558 ~ 45231199 (+)
XLOC_003756 tmc6b coding downstream 13961 45233348 ~ 45244641 (+)
XLOC_003757 CABZ01078080.1 coding downstream 15093 45234480 ~ 45236734 (+)
XLOC_003758 aspscr1 coding downstream 36387 45255774 ~ 45275209 (+)
XLOC_003759 pycr1b coding downstream 67524 45286911 ~ 45298524 (+)
XLOC_003369 CR854846.2 misc upstream 29089683 16122786 ~ 16123082 (+)
XLOC_003318 CR450764.6 misc upstream 32500769 12711700 ~ 12711996 (+)
XLOC_003317 CR450764.16 misc upstream 32518502 12693967 ~ 12694263 (+)
XLOC_003316 CR450764.11 misc upstream 32527166 12685304 ~ 12685599 (+)
XLOC_003315 CR450764.18 misc upstream 32532737 12679732 ~ 12680028 (+)
XLOC_003748 NA non-coding upstream 301546 44907969 ~ 44911219 (+)
XLOC_003747 FO744859.1 non-coding upstream 361172 44851474 ~ 44851593 (+)
XLOC_003745 NA non-coding upstream 409460 44792503 ~ 44803305 (+)
XLOC_003743 NA non-coding upstream 460108 44676506 ~ 44752657 (+)
XLOC_003761 NA non-coding downstream 112014 45331401 ~ 45335873 (+)
XLOC_003763 NA non-coding downstream 135468 45354855 ~ 45356339 (+)
XLOC_003765 CU459093.1 non-coding downstream 169990 45389377 ~ 45390076 (+)
XLOC_003766 NA non-coding downstream 193436 45412823 ~ 45413797 (+)

Expression


Co-expression Network