XLOC_003745


Basic Information

Item Value
gene id XLOC_003745
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 44792503 ~ 44803305 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00008712
ATTTGAATCACGTCAGTGTTTTGAACGATGATTTTTCCGTCCACActtcgcacaaacacacactggaaATCATAATGTGCATTACAgcgacaacacacacactgctggaccGAAACATGACTTTATTATCCGgtcacagtgagagagagagagagtttgttcGGCTGGAGCGACACTGACCCCTGCAGGCCAACTGAAGGATTCACACACACTCAGGAGATACGGATTTTGAGAAACAGCAGAGATGTTTACAGCACCACAGCGACACCTGCAGACTGATGGCGGCATCTCAACACTGGTAAATAAGGCTGTGAATGGATCTTTGTGTTGTTCACGAGTCTCAGAAATGGATGCGTGCGTATTTAAAACAGAGGATGGTATTGTATTGTTGTATAACAGTTCGAGCATGACATGAGTACTTAAATGAATCCTCTGTGAAAATATTACAAGCATCTGCTTGAGTCTGCTCTGTTATGTAATGTTAAAACATGCATTTTATGTCAAGTTGATGCTTTGCACATTACTTATATTAGTTtgttaaaacacaagtgtgtgtt

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00008712 True 557 lncRNA 0.41 3 44792503 44803305

Neighbor

gene id symbol gene type direction distance location
XLOC_003743 NA coding upstream 39846 44676506 ~ 44752657 (+)
XLOC_003744 irf2bp2b coding upstream 66215 44723019 ~ 44726288 (+)
XLOC_003742 rbm34 coding upstream 154661 44617021 ~ 44637842 (+)
XLOC_003741 nid1b coding upstream 188714 44548209 ~ 44603789 (+)
XLOC_003740 NA coding upstream 249505 44539504 ~ 44542998 (+)
XLOC_003746 strn coding downstream 1380 44804685 ~ 44855209 (+)
XLOC_003747 FO744859.1 coding downstream 48169 44851474 ~ 44851593 (+)
XLOC_003748 NA coding downstream 104664 44907969 ~ 44911219 (+)
XLOC_003749 cfap410 coding downstream 129547 44932852 ~ 44936320 (+)
XLOC_003750 si:dkey-93h22.8 coding downstream 289561 45092866 ~ 45107913 (+)
XLOC_003369 CR854846.2 misc upstream 28669421 16122786 ~ 16123082 (+)
XLOC_003318 CR450764.6 misc upstream 32080507 12711700 ~ 12711996 (+)
XLOC_003317 CR450764.16 misc upstream 32098240 12693967 ~ 12694263 (+)
XLOC_003316 CR450764.11 misc upstream 32106904 12685304 ~ 12685599 (+)
XLOC_003315 CR450764.18 misc upstream 32112475 12679732 ~ 12680028 (+)
XLOC_003738 NA non-coding upstream 342140 44447688 ~ 44450363 (+)
XLOC_003737 NA non-coding upstream 393133 44394335 ~ 44399370 (+)
XLOC_003736 NA non-coding upstream 400962 44384924 ~ 44391541 (+)
XLOC_003752 NA non-coding downstream 332710 45136015 ~ 45143840 (+)
XLOC_003754 NA non-coding downstream 409460 45212765 ~ 45219387 (+)
XLOC_003757 CABZ01078080.1 non-coding downstream 431175 45234480 ~ 45236734 (+)

Expression


Co-expression Network