XLOC_003746 (strn)


Basic Information

Item Value
gene id XLOC_003746
gene name strn
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 44804685 ~ 44855209 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00007222
attcacattatttgATAAGTGTCGTCTAAATAATTAAATCCAACGTAATTCTAATTTATaatgaatataaaactaaaatatatatatacaattaatattttattgatgaacaacacaaaaataccctgtcaatatattaaaaattaaagtaaaaacccTATTCAGCTTAATTAGGTTCTCTTTTATGCTGTAAAGCAGGGGTGGGCAAGCTATGGCTCGGGAcccacatgtggctctttgaccaaaaatatgaGGCTCCCTtcaacaaaaaattaaaactgtcactaaaaatcagtttccaattgaaaatacaattaaaatttcctttatattttatatatttacagctaaatgaagaagaataaaaataaaatgatattttatatataatatatatgtgcgtgtgtgtgtgtgtgttatgcatCAATAAAATTTAAGTTGCATCTACAAATTTTACTTCatgtatttaattcatttagaattttacatttacataagatATAATACTTTAGATTGTCATCATTTACAATGATGACAATTCATATTTTGCTAATGACAAACATGCTCCTTTAAACTacaacttttaaaagtaactcaatCGGCTCACTAATCGGCTCGACGGAATCAGTTCACTGAGTCGGCTCACATGGACGATTCACTGCTGATTCGAGCAGCGCTAGCGGAAACGTCATGAAGTGACAGCAGTGAGCGGAGCCGCAGCCGCCCGTTTCCCTTCGAGCAGCGACGCGGATCCAGAGCATCGAACCCAGAGTCCGTGCGGTCCAGCAGACACCGAATCCCGGCCTAGCCATGGACGAGCAGGCGGGCCCCGGTGTGttctttaacaacaacaacaattcgGTTCTCCCCGGCGGAGCGAAAGCGCCTCAGCCGGGCGACGGCGGTGGAGAGGCGGCCCGCGCGCACTACAGTATCCCGGGGATCCTGCACTTTCTGCAGCACGAGTGGGCCCGGTTCGAGCTGGAGCGCGCGCAGTGGGAGGTGGAACGCGCAGAGCTGCAGgctcAGATCGCGTTCCTGCAGGGCGAGAGGAAAGGCCAGGAGAACCTGAAGAAAGATCTGGTGCGGAGGATAAAAATGCTGGAGTACGCTCTCAAGCAGGagagGGCCAAATTCCACAAGCTGAAGTACGGCACCGAACTCAACCAGGGGGACATGAAGCCGCCCAGCTACGACtccgATGACGGCAATGAGAACGAGGCTCTTCCGGAACCGGCAAACAGTCAACTGAGCTGGAAACAGGGGAGACAACTGCTGCGCcagtatCTGCAGGAGGTGGGCTACACAGACACTATTCTAGACGTGAAGTCTCAGCGTGTGAAAGCTCTGCTGGGTCTGTGTGGAGAAACAGGCGGAGACGCCCGAGACGAGCCCATGGTGAACGGCACCGAACCCGCCTCACTCAAGGACAGCACACACACCATGATCGGTAAAGCAGAGATGTCAGACTCGGCCACAGTTCTGGAGGCCTTCAAGTTCATCGAGAAAGCAGCGGCAGAGTTcagtgatgaggaggaggatgaggaCAGCGAAGGACAGAACAGGAGCATCGTGGATCTGGCCACTaTGGTGAGGAGGAAGGTGTCCCCGTCTCCCTCCTCGTCCTCCACAGACGTCAGTGAGGATCTGGACACAGACGAGGTGCTGAAGGGCTTCGACTTCCTGGCCAACACTGAGGACATGATGGAGGGACAGACACAGGACACTCCTGCTGCTGGAGACTGGGAGAAGGAAGAGCAGAGCCCGTTGTGTGAGTCGTGGGACGTGGACGAGGGTCTGATCTCCAAACTGAAGGAGCAGTACAAGAAGGAGCGCAAGGGCAAGAAGGGGGTGAAGAGGCCGAACCGCTGTAAACTGCAGGACATGTTGGCTAATCTGCGGGATGCAGAGGATCTGTCCTCTATCCAGCCTCCGGTGGCTCCACCAGCCCGGCCCAGTTTACCCCGACTCAACGAACACCAGCTGGGACGCACCGACGAAGTGGAAGCGATGACGTTTCCTCCGTCCTCTGGAAAGTCATTCATCATGGGGACAGATGAGGCTCTGGAGAATGAACTGGGTCTCGGAGAGCTAGCCGGACTCACAGTCGCTAACGAGGCCGAGAGTCTGTCCTACGACATCACTAATAATAAAGACGCGCTGAGGAAAACGTGGAACCCCAAGTTCACGCTCAGGAACCACTTCGACTCGATCCGCGGGCTGGCGTTTCACCCGGTGGAGCCGGTTCTGATCACCGCATCTGAAGACCACACGCTCAAGATGTGGAACCTGCAGAAGACCGCGCCCACCAAGAAGTGTGCAGCTCTTGATGTGGAGCCCATCTACACCTTCAGGGCTCACAGagGGCCAGTGCTGTGTGTGGTCATGAGCTCCAGTGGAGAGCAGTGTTTCAGTGGTGGGCTGGACGGAACCATCCAGAGCTGGAACACTCCAAACCCAAACATCGACCCCTACGACTCTTATGagtcgtcagtgttgcgtgGTTCTCTCAGTGGACACACAGATGCGGTGTGGGGTTTGGTGTTCAGCTCTGCTCATCAGCGTCTGCTGTCCTGCTCTGCTGACGGGACGGTGCGGCTCTGGAGCGCTGCAGACACAGAGCCTGCCATCGCCTGCTTCAACACAAATaaggaGCTGGGCGTGCCGTCATCAGTGGATGTGGTGTGCAGTGATCCAGCTCACATGGTCACGGCCTTCAGCAACGGCAGGACGGGAATCTACAACATGGAGACACGACAACTGATCCTGGAGCTAGAGTCTCAGAGCGCAGGAAAACCtgatgCGCCGTGTCAAATCAATAAAGTGCTGAGTCACCCGACGCTGCCCATCACCATCACCGCTCAGGAGGACCGACACATTCGCTTCTTCGACAACAACACCGgaaagCTGATTCACTCTATGGTGGCTCATCTGGATGCTGTGACGAGTCTAGCAGTGGATCCAAACGGACTCTACCTGATGTCTGGCAGTCATGACTGCTCGGTGCGTCTGTGGAACATGGAGAGCAAGACGTGCATCCAGGAGTTCACGGCGCACAGGAAGAAATTCGACGAGTCCATAAACGACGTTGCGTTTCACCCCAGCAAGTGCTACATCGGCAGTGCAGGAGCCGACGCACTCGCCAAAGTCTTCGTATGACCTTCGCAAAAAACACAGAGAAATAAAACACACCTCGTCCTGATGATCCGGGCCGGCCTGGAGCAACAAAACCAGGAGCTCCTGATCCACAAGAACATCCCTCTAGTCTTACTTTCTCTGGGTTTCAGTGGATTTTTCCTGTCCTTCCTGACGTGAGCGCCAGCTGATTTCCCCGTcttacctttattttttttttctccttttaaaACGACGTGCCTTTTGCTTCACACAAACGTTTGCGCTCCGGAGAGGAATTGTTTTAAACTCACTCAACTCCACGTCCATTTATTTGCTCTGAAAGTCAAGATGATTGTCTCAGTCATGCGGGATTTATCCGAACGATCTTGGAGATGCATTCAATTAAAGGACTAAAATCGAAAGGCGGCAGATTTATTCAATTTGTACATACtattacaaaaacaaacgtgACTCACTTTGATGTTTGAATTTTTGACGTTAAACGACTAAATTTCTACATGTTTGTGAATATAGATGCAGACGTGATTGAGCATCAAGGTCAGATTTGACTCGTTTCACTGCGGAATGGGTCGTTTTTTGCATTGCGAGATTATTAACGAAAATTATATTGCAATTTTGCGACGTAAAAATAtgattttgttaaattttgtgAGGAAAAAGCATCAAATCTCGACACTCCAAAGCCGTTTAGCATCAAGATGTATGTCTCATGATTGACATTTTTAAAGCTAtacgttaataataataatatttatgtaatgtttaaatataagCCTGTCGGAGAGTTTGCGGtcgaaaaaactaaacaaaaacatgaCTCAATTAAATGTTTGAATTGTTGAGTAAACTACTAAATTTCGACATGTATGTGATCATACATGCACATGAGGATCCTATTTGACTGATTTTTCCACAGAATTAATCATTTTTGCATTGCGAGATTATTAACGAAAATCATGCTGCAATGCTAAACAAAACAGGCTTCAATTCTGCGAAGTAAactattattttgttaaattttgtgTTGAAAAACTATCTCGACACTCCAAAGCCATTCAACATCATGACGTACGTCtttagatttacatttttaaaaagctatacattaataatattatttccgTTATTTTACTGAACGATCTTGGAGATGCATTGAATTAAAGGACTAAAATCGAAAGGCGACAGATTTATTCAATTTGTACATACtattacaaaaacaaacgtgACTCACTTTGATGTTTGAAATTTTTGGATATAGCTACTAAATTTCTACATGTTTGTGATTTTAGATGCAGGCGTGACTCGTTTCATTGCACAATGGTTCGTTTTTGCATTGAGAGATTACTAATGAAAATTATATTGCAATTTTGTGACGTAAAAATAggattttgttaaattttgtgATGAAAACCATCAAATCTCGACACTCCAAAGCTCCTCAGCATCAAAATGTATGTCTTATGATTAACATTTTTTAGAGCTATACATCAATATTTacgtcatttttaaataaaagcctGCAATAGGGTTTGCGGTCAGAAGAAAACAAACGTGACTCACTTTAATGTTTGAATTTTGTGGTAAATCTACTCAATTTCTGCGAGTTTGTGATTGTAAATGCACATGTTTGAGCCTCAGGATCATATTTGACTAGTTTCAACGCAGAATTAATCATTTTTCGCATTGCgagattaaaacaaaaataatgctgCAATGCTAAACGAAACAGGCTTCAATTTTGTGACGAAAAAtatgattttgtttaattttgtgttgAAAAAGCATCTCGACACTCCAAAGCTCCAAACTTACGTCTCTagatatacatgtttttaaagctatacattaataataatattttcaacaTTTTGCCATAAATTCAGTAACATTCAGTCTTTATTGTGAACAATATTGGAGATGCTTTGAATAAAAGACTAAAATCGAACGCAACCGATTTATTCAATTTGTATATAACATTACAAAAAACGTGACTTTGTGTGAATTTTTGAGTAAAGCTACTAAATTTCTGCCTGTTTGTGATTATAAATGCACACGTTTTAGCGTCATGATTAAATTTGACTTGTTTTACAGATTATTAACGACAATAATATTACACAGCTACATAAAAACTGGCTTGAACTTTGTGacgtaaattttatttatttatttttatttatttattttccaatatAATTCAACATCATGACGTACGTCTCTAGATCAAAATTTTACAAAGctatacattaaataatattcacgtcatttttatatataaacctGCAGGAGGGTTTGCAGCCgacccaaaaaaaaaactgattgcatTACGATTTGCGTTGAGatgattaacaaaaataatactgTCGTAAATATCTAAATCATTAACATAAGCTTGAGACATAAAATTTGATTTTGCGATTTAAGAAATCATCGACTCTCAAAACTCAAAAACATCAGGACGTACATCTCTCGATCACGATTTATTTGACACTATacattattaatcatatttacgTAAATTTtgcatataaacatttaaatttaatatttaaactcaATCTGACGccattttgtgtgtttaatatttaaaatcatCTCATTAATTAACCTACAAACATGGAGTAAACAAGTTCAGAATATTTGACGCATTTTATGTCGATAAATCTTGCGTCGTTTTGACGCGTACAATGATCCGGATCTCTATATTTGTGGGAAATCtgttgatgtttatttatttttggccttgtTTTTTCTGTAATGCCAAACGTGAGCGTCAGGAGCGGTTAAATAAGACGTATAACTCACCTTCGCTTTTACGTTTCATATGTGAAGGTGTGTGTTTTTAATGGCGGTGTGGCTGGTGGGCAGCTCCAGGAttacttttaatttgtttttgttttttaactggtCTGTGATTACTTGAACtctctaggtgtgtgtgtgtgtgtgtgtgtgtgtgtgcag

Function

symbol description
strn Predicted to enable armadillo repeat domain binding activity; calmodulin binding activity; and protein phosphatase 2A binding activity. Predicted to be located in membrane. Predicted to be active in dendrite. Orthologous to human STRN (striatin).

GO:

id name namespace
GO:0008150 biological_process biological_process
GO:0030425 dendrite cellular_component
GO:0051721 protein phosphatase 2A binding molecular_function
GO:0005516 calmodulin binding molecular_function
GO:0070016 armadillo repeat domain binding molecular_function
GO:0044877 protein-containing complex binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070112-1172 Predicted to enable armadillo repeat domain binding activity; calmodulin binding activity; and protein phosphatase 2A binding activity. Predicted to be located in membrane. Predicted to be active in dendrite. Orthologous to human STRN (striatin).

Ensembl:

ensembl_id ENSDARG00000100011

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00007222 True 6099 mRNA 0.43 18 44804685 44855209

Neighbor

gene id symbol gene type direction distance location
XLOC_003745 NA coding upstream 1380 44792503 ~ 44803305 (+)
XLOC_003743 NA coding upstream 52028 44676506 ~ 44752657 (+)
XLOC_003744 irf2bp2b coding upstream 78397 44723019 ~ 44726288 (+)
XLOC_003742 rbm34 coding upstream 166843 44617021 ~ 44637842 (+)
XLOC_003741 nid1b coding upstream 200896 44548209 ~ 44603789 (+)
XLOC_003748 NA coding downstream 52760 44907969 ~ 44911219 (+)
XLOC_003749 cfap410 coding downstream 77643 44932852 ~ 44936320 (+)
XLOC_003750 si:dkey-93h22.8 coding downstream 237657 45092866 ~ 45107913 (+)
XLOC_003751 ogal coding downstream 255656 45110865 ~ 45126501 (+)
XLOC_003752 NA coding downstream 280806 45136015 ~ 45143840 (+)
XLOC_003369 CR854846.2 misc upstream 28681603 16122786 ~ 16123082 (+)
XLOC_003318 CR450764.6 misc upstream 32092689 12711700 ~ 12711996 (+)
XLOC_003317 CR450764.16 misc upstream 32110422 12693967 ~ 12694263 (+)
XLOC_003316 CR450764.11 misc upstream 32119086 12685304 ~ 12685599 (+)
XLOC_003315 CR450764.18 misc upstream 32124657 12679732 ~ 12680028 (+)
XLOC_003740 NA non-coding upstream 261687 44539504 ~ 44542998 (+)
XLOC_003738 NA non-coding upstream 354322 44447688 ~ 44450363 (+)
XLOC_003737 NA non-coding upstream 405315 44394335 ~ 44399370 (+)
XLOC_003754 NA non-coding downstream 357556 45212765 ~ 45219387 (+)
XLOC_003757 CABZ01078080.1 non-coding downstream 379271 45234480 ~ 45236734 (+)
XLOC_003761 NA non-coding downstream 476192 45331401 ~ 45335873 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000306_00442430_00460709 NA coding CI01000306 null 442430 ~ 461183 (+)
bowfin (Amia calva) AMCG00001599 LOC106564825,LOC108430145 coding CM030143.1 CM030143.1 8606654 ~ 8631461 (+)