XLOC_003749 (cfap410)


Basic Information

Item Value
gene id XLOC_003749
gene name cfap410
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 44932852 ~ 44936320 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00007224
ATGAAATTAACCCGTAAACTGGTTCTGGCTCGAGCTAAAGCTTCAGACCTGGAGAGCGTGAAGAAGCTGaactgctgGGGTTGCAATCTGACAGATATCTCGATCTTCACGGAGATTCCCAACATTGAGGTTCTCACTCTCAGtgcgaATCAGATCGTGTCACTGGAGCACCTGTCCTCCTGTCAGCACCTGTGTGAGCTGTACCTGAGGCGGAACAGCATCTCCAGTCTGTGTGAGCTGCAGCACCTGAAGCCCCTGCGCTGCCTGCGGGTCCTGTGGCTGGCAGAAAACCCCTGCTGCTCGAACCCTCAGCAGTACAGACTCACCGTCATCAGGAACCTGCCCGGCCTGCACAAGCTGGACAACCAGGTTGTTACAGAGGAGGAGCTTGCGCAGGCGCTGCGGGAAGGGGAGGAGCTTGTGAGTCCTCCAGGCCCCACCCCCACCAGCTCCACCAATGGCCTTACAGAAGCAGACTCTGAGAACGACCCTCAAGATTACAGCATGGAGGAAACAAATATGATTCGGGCTCAGCTGGGACTGAAGCTGCTGTCCAGAGACAAGTTCCCATCACTGCCATCACCACGAGAAGCTGGAGACGCACACAAGAAGAAgTCTCACACACTGGAGgcggtgctgctgctgctgaaggATCTGGATGTGGACGAGCTCAGGATGGTTCAGTCAGCCACTGAGAGTAAACTCAGATCCTGCAGGAGACTCAGAGAACAGCagaacactgcacacacacaccagcagaacactgcacacacacaccagcagaaCACTGCAGACATCTgctcataacacacacacacacacacacacacacacacacacacacacacacgcgcatacacACCAGCAGAACACTGCAGACATCTGCTcataacacacacgcacgcacgcacgcacgcacgcacacacacacacacacacacacacacacgtgtgtataTCACTTGACAGTGGAGGCTCGTTTGTTGACATTAGTCTGCACTGACAGCAGATATCGACTGATTACAGCATTCACTCATATTTGTTCatctttgaaaaataataaaaatgttaaaaaattttttttttttaatgtataa

Function

symbol description
cfap410 Predicted to be involved in cytoskeleton organization. Human ortholog(s) of this gene implicated in axial spondylometaphyseal dysplasia. Orthologous to human CFAP410 (cilia and flagella associated protein 410).

GO:

id name namespace
GO:0007010 cytoskeleton organization biological_process
GO:0060271 cilium assembly biological_process
GO:0036064 ciliary basal body cellular_component

KEGG:

id description
ko03400 DNA repair and recombination proteins

ZFIN:

id description
ZDB-GENE-160114-19 Predicted to be involved in cytoskeleton organization. Human ortholog(s) of this gene implicated in axial spondylometaphyseal dysplasia. Orthologous to human CFAP410 (cilia and flagella associated protein 410).

Ensembl:

ensembl_id ENSDARG00000099397

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00007224 True 1097 mRNA 0.52 8 44932852 44936320

Neighbor

gene id symbol gene type direction distance location
XLOC_003748 NA coding upstream 21633 44907969 ~ 44911219 (+)
XLOC_003746 strn coding upstream 77643 44804685 ~ 44855209 (+)
XLOC_003747 FO744859.1 coding upstream 81259 44851474 ~ 44851593 (+)
XLOC_003745 NA coding upstream 129547 44792503 ~ 44803305 (+)
XLOC_003743 NA coding upstream 180195 44676506 ~ 44752657 (+)
XLOC_003750 si:dkey-93h22.8 coding downstream 156546 45092866 ~ 45107913 (+)
XLOC_003751 ogal coding downstream 174545 45110865 ~ 45126501 (+)
XLOC_003752 NA coding downstream 199695 45136015 ~ 45143840 (+)
XLOC_003753 tk1 coding downstream 216784 45153104 ~ 45158056 (+)
XLOC_003754 NA coding downstream 276445 45212765 ~ 45219387 (+)
XLOC_003369 CR854846.2 misc upstream 28809770 16122786 ~ 16123082 (+)
XLOC_003318 CR450764.6 misc upstream 32220856 12711700 ~ 12711996 (+)
XLOC_003317 CR450764.16 misc upstream 32238589 12693967 ~ 12694263 (+)
XLOC_003316 CR450764.11 misc upstream 32247253 12685304 ~ 12685599 (+)
XLOC_003315 CR450764.18 misc upstream 32252824 12679732 ~ 12680028 (+)
XLOC_003740 NA non-coding upstream 389854 44539504 ~ 44542998 (+)
XLOC_003757 CABZ01078080.1 non-coding downstream 298160 45234480 ~ 45236734 (+)
XLOC_003761 NA non-coding downstream 395081 45331401 ~ 45335873 (+)
XLOC_003763 NA non-coding downstream 418535 45354855 ~ 45356339 (+)

Expression


Co-expression Network