XLOC_003753 (tk1)


Basic Information

Item Value
gene id XLOC_003753
gene name tk1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 45153104 ~ 45158056 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00007228
GGCTACTATAAATAGACAAACTGGCGGTGGCGGGATGTTCAAATCCTGCTCTGAGTTGTACTGAACATATcgagatattaataaaaaataaagacaacaagCAGACGACATGGATTGTTTAAATGTAGCCAGAATTTTGCCTAATTCTCCACGGAAGACAAGAGGACAGATACAGGTTATTTTCGGACCAATGTTCTCAGGAAAAAGcacaGAGTTGATGCGGCGTGTGCGCAGGTTTCAGGTGGCTCAGTATTCCTGTCTGCTCATCAAATACGCCAAAGACACGCGCTACTCCTGTACAGGGATGGCCACACACGACATGTATGAAcaagagattgtGAACACTATGGAGGCCGTTCCTGCAAACCGTCTGCGTGACGTCGCTCCTCTGGCTCTCCAGGCCTGCGTCATCGGCATCGACGAGGGACAGTTTTTCCCAGACACCGTTGAGTTCTGTGAAGAAATGGCCAACATGGGCAAAACCATCATCGTGGCGGCGCTGGACGGAACCTTCCAGAGAAAGgcgttTGGTAACATCCTGAATCTGGTTCCTCTGGCGGAGAGTGTGGTGAAGCTGAACGCCGTCTGCATGCAGTGTTTTAAAGAAGCGGCGTACACCAAACGCCTCGGAGCTGAGAAAGAGGTGGAGGTGATCGGCGGTTCAGATAAATATCACGCTGTGTGTCGCTGCTGTTACGGAGGCCTGATGAAGGAGAACCGCAGCCCGCAGAGAGAGGAGACGCCGCCGCACGCCAGCGCCGCTAAAACACTCGAGTACAGCACAGCCACGCGCAAACTCTTCACTGCACTGCATCTGTGAGCGCACACACATACTGATTCATCTGTGAGCGCACACGCATTCTGATTCATCTGCGAGCGCACACGCATACCGATTCATCTGCGAGCGCACACACATACTGATTTATCTGTGAGCGCACACACATACTGATTCATCTGCGAGCGCAAACACATACTGATTCATCTGTGAGCGCACACACATATTGATTTATCTGTGAGCGCACACACATACTGATTCATCTGTGAGCGCACACGCATACTGATTCATCTGTGAGCGCACACGCATACTTATTCATCTGAGCGCACACACATATTGATTTATCTGTGAGCGCACACACATATTGATTTATCTGTGAGCGCACACACATACTGATTAATCTGTGAGCGCACACGCATTCTGATTCATCTGCGAGCGCACACGCATACCGATTCATCTGCGAGCGCACACACATACTGATTTATCTGTGAGCGCACACACATACTGATTCATCTGCGAGCGCAAACACATACTGATTCATCTGTGAGCGCACACACATATTGATTTATCTGTGAGCGCACACACATACTGATTCATCTGTGAGCGCACACGCATACTGATTCATCTGTGAGCGCACACGCATACTTATTCATCTGAGCGCACACACATATTGATTTATCTGTGAGCGCACACACATATTGATTTATCTGTGAGCGCACACACATACTGATTAATCTGTGAGCGCACACGCATTCTGATTCATCTGTGAGCGCACACGCATACTGATTCATCTGTGAGCGCACACGCATACTGATTCATCTGTGAGCGCACACGCATACTTATTCATCTGAGCGCACACACATATTGATTTATCTGTGAGCGCACACACATATTGATTTATCTGTGAGCGCACACACATACTGATTAATCTGTGAGCGCACACGCATTCTGATTCATCTGTGAGCGCACACGCATACTGATTCATCTGTGAGCGCACACGCATACTGATTCATCTGTGAGCGCACACACATATTGATTTATCTGTGAGCGCACACACATATTGATTTATCTGTGAGCGCACACACATACTGATTCATCTGTGAACGCAAACGCATTCTGATTCATCTGTGAGCGCACACGCATACTTATTCATCTGTGAGCGCACACACATATTGATTTATCTGTGAGCGCACACACATATTGATTTATCTGTGAGCGCACACACATACTGATTCATCTGTGAGCGCACACGCATTCTGATTCATCTGTGAGCGCACACGCATACTGATTCATCTGTGAGCGCACACGCATTCTGATTCATCTGTGAGCGCACACACATACTGATTCATCTGTGAGCGCACACGCATACTGATTCATCTGTGAGCGCACACGCATACTGATTCATCTGTGAGCGCACACGCATACTGATTCATCTGTGAGCGCACACGCATACTGATTCATCTGTGAGCGCACACATCTACACAAAGACATtctcacaaagacacacacacaatctctctcacacacacacacacaccatcactcACAGATACGAACACTAATTCATCTGTGagtacacactctctcacacgtACTtgcgtacaaacacacacacacaatgcatatCAATCTAGGCACAATCTCACCAGTACaaacacactgtacacaaacacaaGACTCAGACAAACAcatgcgctctctctctcacactcattgtatacaatcacacacacacacacgcctgatGTCTGTGTGCATTACTCGGCTGTATTTCCTGTACATATCTTTAACtaattttactgtgtgtgtgtgtctctctctcttaggttttaaaataagcaaatcttttgtatgtttagttttatttaaatgatcttGAAAGTAATTTATATTTGTCTAAGACGAGACCAGCTGACACTATGAAGCACTGCCAAACACTGACGTCTTAGGAGTAATAgtcaataaaacaaatagattAT
>TCONS_00007229
GGCGGTGGCGGGATGTTCAAATCCTGCTCTGAGTTGTACTGAACATATcgagatattaataaaaaataaagacaacaagCAGACGACATGGATTGTTTAAATGTAGCCAGAATTTTGCCTAATTCTCCACGGAAGACAAGAGGACAGATACAGGTTATTTTCGGACCAATGTTCTCAGGAAAAAGcacaGAGTTGATGCGGCGTGTGCGCAGGTTTCAGGTGGCTCAGTATTCCTGTCTGCTCATCAAATACGCCAAAGACACGCGCTACTCCTGTACAGGGATGGCCACACACGACATGAACACTATGGAGGCCGTTCCTGCAAACCGTCTGCGTGACGTCGCTCCTCTGGCTCTCCAGGCCTGCGTCATCGGCATCGACGAGGGACAGTTTTTCCCAGACACCGTTGAGTTCTGTGAAGAAATGGCCAACATGGGCAAAACCATCATCGTGGCGGCGCTGGACGGAACCTTCCAGAGAAAGgcgttTGGTAACATCCTGAATCTGGTTCCTCTGGCGGAGAGTGTGGTGAAGCTGAACGCCGTCTGCATGCAGTGTTTTAAAGAAGCGGCGTACACCAAACGCCTCGGAGCTGAGAAAGAGGTGGAGGTGATCGGCGGTTCAGATAAATATCACGCTGTGTGTCGCTGCTGTTACGGAGGCCTGATGAAGGAGAACCGCAGCCCGCAGAGAGAGGAGACGCCGCCGCACGCCAGCGCCGCTAAAACACTCGAGTACAGCACAGCCACGCGCAAACTCTTCACTGCACTGCATCTGTGAGCGCACACACATACTGATTCATCTGTGAGCGCACACGCATTCTGATTCATCTGCGAGCGCACACGCATACCGATTCATCTGCGAGCGCACACACATACTGATTTATCTGTGAGCGCACACACATACTGATTCATCTGCGAGCGCAAACACATACTGATTCATCTGTGAGCGCACACACATATTGATTTATCTGTGAGCGCACACACATACTGATTCATCTGTGAGCGCACACGCATACTGATTCATCTGTGAGCGCACACGCATACTTATTCATCTGAGCGCACACACATATTGATTTATCTGTGAGCGCACACACATATTGATTTATCTGTGAGCGCACACACATACTGATTAATCTGTGAGCGCACACGCATTCTGATTCATCTGCGAGCGCACACGCATACCGATTCATCTGCGAGCGCACACACATACTGATTTATCTGTGAGCGCACACACATACTGATTCATCTGCGAGCGCAAACACATACTGATTCATCTGTGAGCGCACACACATATTGATTTATCTGTGAGCGCACACACATACTGATTCATCTGTGAGCGCACACGCATACTGATTCATCTGTGAGCGCACACGCATACTTATTCATCTGAGCGCACACACATATTGATTTATCTGTGAGCGCACACACATATTGATTTATCTGTGAGCGCACACACATACTGATTAATCTGTGAGCGCACACGCATTCTGATTCATCTGTGAGCGCACACGCATACTGATTCATCTGTGAGCGCACACGCATACTGATTCATCTGTGAGCGCACACGCATACTTATTCATCTGAGCGCACACACATATTGATTTATCTGTGAGCGCACACACATATTGATTTATCTGTGAGCGCACACACATACTGATTAATCTGTGAGCGCACACGCATTCTGATTCATCTGTGAGCGCACACGCATACTGATTCATCTGTGAGCGCACACGCATACTGATTCATCTGTGAGCGCACACACATATTGATTTATCTGTGAGCGCACACACATATTGATTTATCTGTGAGCGCACACACATACTGATTCATCTGTGAACGCAAACGCATTCTGATTCATCTGTGAGCGCACACGCATACTTATTCATCTGTGAGCGCACACACATATTGATTTATCTGTGAGCGCACACACATATTGATTTATCTGTGAGCGCACACACATACTGATTCATCTGTGAGCGCACACGCATTCTGATTCATCTGTGAGCGCACACGCATACTGATTCATCTGTGAGCGCACACGCATTCTGATTCATCTGTGAGCGCACACACATACTGATTCATCTGTGAGCGCACACGCATACTGATTCATCTGTGAGCGCACACGCATACTGATTCATCTGTGAGCGCACACGCATACTGATTCATCTGTGAGCGCACACGCATACTGATTCATCTGTGAGCGCACACATCTACACAAAGACATtctcacaaagacacacacacaatctctctcacacacacacacacaccatcactcACAGATACGAACACTAATTCATCTGTGagtacacactctctcacacgtACTtgcgtacaaacacacacacacaatgcatatCAATCTAGGCACAATCTCACCAGTACaaacacactgtacacaaacacaaGACTCAGACAAACAcatgcgctctctctctcacactcattgtatacaatcacacacacacacacgcctgatGTCTGTGTGCATTACTCGGCTGTATTTCCTGTACATATCTTTAACtaattttactgtgtgtgtgtgtctctctctcttaggttttaaaataagcaaatcttttgtatgtttagttttatttaaatgatcttGAAAGTAATTTATATTTGTCTAAGACGAGACCAGCTGACACTATGAAGCACTGCCAAACACTGACGTCTTAGGAGTAATAgtcaataaaacaaatagattATC

Function

symbol description
tk1 Predicted to enable thymidine kinase activity. Predicted to be involved in thymidine metabolic process. Predicted to act upstream of or within DNA biosynthetic process and phosphorylation. Is expressed in several structures, including alar plate midbrain region; nervous system; optic vesicle; pectoral fin musculature; and proliferative region. Orthologous to human TK1 (thymidine kinase 1).

GO:

id name namespace
GO:0071897 DNA biosynthetic process biological_process
GO:0046104 thymidine metabolic process biological_process
GO:0016310 phosphorylation biological_process
GO:0005575 cellular_component cellular_component
GO:0004797 thymidine kinase activity molecular_function
GO:0016740 transferase activity molecular_function
GO:0005524 ATP binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0016301 kinase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-5801 Predicted to enable thymidine kinase activity. Predicted to be involved in thymidine metabolic process. Predicted to act upstream of or within DNA biosynthetic process and phosphorylation. Is expressed in several structures, including alar plate midbrain region; nervous system; optic vesicle; pectoral fin musculature; and proliferative region. Orthologous to human TK1 (thymidine kinase 1).

Ensembl:

ensembl_id ENSDARG00000102245

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00007228 False 2754 mRNA 0.46 7 45153104 45158055
TCONS_00007229 True 2715 mRNA 0.46 7 45153126 45158056

Neighbor

gene id symbol gene type direction distance location
XLOC_003752 NA coding upstream 9264 45136015 ~ 45143840 (+)
XLOC_003751 ogal coding upstream 26603 45110865 ~ 45126501 (+)
XLOC_003750 si:dkey-93h22.8 coding upstream 45191 45092866 ~ 45107913 (+)
XLOC_003749 cfap410 coding upstream 216784 44932852 ~ 44936320 (+)
XLOC_003748 NA coding upstream 241885 44907969 ~ 44911219 (+)
XLOC_003754 NA coding downstream 54709 45212765 ~ 45219387 (+)
XLOC_003755 tmc6b coding downstream 61502 45219558 ~ 45231199 (+)
XLOC_003756 tmc6b coding downstream 75292 45233348 ~ 45244641 (+)
XLOC_003757 CABZ01078080.1 coding downstream 76424 45234480 ~ 45236734 (+)
XLOC_003758 aspscr1 coding downstream 97718 45255774 ~ 45275209 (+)
XLOC_003369 CR854846.2 misc upstream 29030022 16122786 ~ 16123082 (+)
XLOC_003318 CR450764.6 misc upstream 32441108 12711700 ~ 12711996 (+)
XLOC_003317 CR450764.16 misc upstream 32458841 12693967 ~ 12694263 (+)
XLOC_003316 CR450764.11 misc upstream 32467505 12685304 ~ 12685599 (+)
XLOC_003315 CR450764.18 misc upstream 32473076 12679732 ~ 12680028 (+)
XLOC_003747 FO744859.1 non-coding upstream 301511 44851474 ~ 44851593 (+)
XLOC_003745 NA non-coding upstream 349799 44792503 ~ 44803305 (+)
XLOC_003743 NA non-coding upstream 400447 44676506 ~ 44752657 (+)
XLOC_003761 NA non-coding downstream 173345 45331401 ~ 45335873 (+)
XLOC_003763 NA non-coding downstream 196799 45354855 ~ 45356339 (+)
XLOC_003765 CU459093.1 non-coding downstream 231321 45389377 ~ 45390076 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000306_00571360_00574170 KITH, TK1 coding CI01000306 null 571263 ~ 574535 (+)