XLOC_003755 (tmc6b)


Basic Information

Item Value
gene id XLOC_003755
gene name tmc6b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 45219558 ~ 45231199 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00007230
TCGACGCTCATTAGAAGTTTGTGAAGTTTGTGTTCGGCGACCTGACTCGAGCTGTGcAGGATGAGCATCAGGTGTGTGTGTCCGTGAGCTGCAGGAGTGATGGCCGGCAGGGTCAGCTTCGGCTCTGATCTGCACACCGATGTGGAgaGTCCGACTGATGAAGATGGGGTTCACGACTCGTTCTGTCAGCTGATCGAGGAACAGTGTTACGGTCGTCATGATGATGGGATGGAGATGACCCCGCTTGACCCTGACCTGGAGGATGAGAGCAGAGatgATGTGGTGTATCTGGACGGTCCGGCTCGTCATTGGTCAGAGAGTCTCAGTGATGCGCCGCAGCAGACGGATAATCTGATTGGAGAGCGCTGGTCATCTGACACACTCAAAGTGCTGTCCTCCATGCCCAGCCGCACCAtcgGGCGCAGTCGAGGCGCGATCATCTCTCAGTATTATAACCGCACCATGCAGCTGCGCAGACGCAGGCAGAGCCGGCCATCCATCCAGCACTTCCCTCACTCCGCACGGCCCAGCATACGAGGGTACGGCGTGGAGACAGACGGAGCTGGCTTCCAGGAGGAAGagAATAAGAGAGAGCGTTTGGTGAATAATCTGCAGAATCTGTCTGTGAATGATCGAGTGCGGATGCTGAGAGCCATGCCACTGAGTCTGGCAGAGAAGAAAGAGCTccggaTGTTGGTTCTGAATAAGGGCGAGCACTCTCTGTCTGAGAATCAGATTCCCTGCTGCAGTCAGCTCAAATACTACATCATCAA

Function

symbol description
tmc6b Predicted to enable mechanosensitive ion channel activity. Predicted to be located in membrane. Predicted to be integral component of plasma membrane. Human ortholog(s) of this gene implicated in epidermodysplasia verruciformis. Orthologous to human TMC6 (transmembrane channel like 6).

GO:

id name namespace
GO:0008150 biological_process biological_process
GO:0005887 integral component of plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0008381 mechanosensitive ion channel activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040718-460 Predicted to enable mechanosensitive ion channel activity. Predicted to be located in membrane. Predicted to be integral component of plasma membrane. Human ortholog(s) of this gene implicated in epidermodysplasia verruciformis. Orthologous to human TMC6 (transmembrane channel like 6).

Ensembl:

ensembl_id ENSDARG00000004875

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00007230 True 773 mRNA 0.55 7 45219558 45231199

Neighbor

gene id symbol gene type direction distance location
XLOC_003754 NA coding upstream 171 45212765 ~ 45219387 (+)
XLOC_003753 tk1 coding upstream 61502 45153104 ~ 45158056 (+)
XLOC_003752 NA coding upstream 75718 45136015 ~ 45143840 (+)
XLOC_003751 ogal coding upstream 93057 45110865 ~ 45126501 (+)
XLOC_003750 si:dkey-93h22.8 coding upstream 111645 45092866 ~ 45107913 (+)
XLOC_003756 tmc6b coding downstream 2149 45233348 ~ 45244641 (+)
XLOC_003757 CABZ01078080.1 coding downstream 3281 45234480 ~ 45236734 (+)
XLOC_003758 aspscr1 coding downstream 24575 45255774 ~ 45275209 (+)
XLOC_003759 pycr1b coding downstream 55712 45286911 ~ 45298524 (+)
XLOC_003760 mafgb coding downstream 68248 45299447 ~ 45328509 (+)
XLOC_003369 CR854846.2 misc upstream 29096476 16122786 ~ 16123082 (+)
XLOC_003318 CR450764.6 misc upstream 32507562 12711700 ~ 12711996 (+)
XLOC_003317 CR450764.16 misc upstream 32525295 12693967 ~ 12694263 (+)
XLOC_003316 CR450764.11 misc upstream 32533959 12685304 ~ 12685599 (+)
XLOC_003315 CR450764.18 misc upstream 32539530 12679732 ~ 12680028 (+)
XLOC_003748 NA non-coding upstream 308339 44907969 ~ 44911219 (+)
XLOC_003747 FO744859.1 non-coding upstream 367965 44851474 ~ 44851593 (+)
XLOC_003745 NA non-coding upstream 416253 44792503 ~ 44803305 (+)
XLOC_003761 NA non-coding downstream 100202 45331401 ~ 45335873 (+)
XLOC_003763 NA non-coding downstream 123656 45354855 ~ 45356339 (+)
XLOC_003765 CU459093.1 non-coding downstream 158178 45389377 ~ 45390076 (+)
XLOC_003766 NA non-coding downstream 181624 45412823 ~ 45413797 (+)

Expression


Co-expression Network