XLOC_003765 (CU459093.1)


Basic Information

Item Value
gene id XLOC_003765
gene name CU459093.1
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 45389377 ~ 45390076 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00007250
CGACTTTCCATAGAGATGTGGTTATCAGCTTTTCTTTTTAAACAATGCATTAGTTTCAAATACAATACTCATAACTGCATgctaattaatcagttttaatcaATTCTactttactatttttaaaattttaaatgtgcaaatataaaatcaaCATCATCTCAATCTTGGGGGAGAGTAAATGAGTAGATTTACTACTaaattatttgcttatttttttgtgATCTCGCTTTAAAGCTGatgaacattttacagtaatttgacaTATAAAGCTTCATAGTTGTGGAGCAGGTTAAATATGTCAAGCGCattgtgtattttattatattttttgtagtaATTTTGTTGATTTGGTTTAGTTTGCATTTCATTGTTGAAGGATGTGATAGACTTTAGAGCAGATTTAGAGCAGATTTACTGGTGCAAGGCAAAGAAGAGACAACCCAACTCTAAACAACTGAAAGGGAACTTTGAAGAAAGCAGGCTTCTATTCACATTTTAATAGTACAGTAATTAAGCCTGCAATGTAAAGGCTAGCTCTGAAAATATTTAGTTTACAAC

Function

GO:

id name namespace
GO:0060359 response to ammonium ion biological_process
GO:0061959 response to (R)-carnitine biological_process
GO:0033273 response to vitamin biological_process
GO:0031667 response to nutrient levels biological_process
GO:0009991 response to extracellular stimulus biological_process

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000098082

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00007250 True 558 lncRNA 0.30 2 45389377 45390076

Neighbor

gene id symbol gene type direction distance location
XLOC_003763 NA coding upstream 33038 45354855 ~ 45356339 (+)
XLOC_003762 si:ch73-100l22.3 coding upstream 37553 45339906 ~ 45351824 (+)
XLOC_003761 NA coding upstream 53504 45331401 ~ 45335873 (+)
XLOC_003760 mafgb coding upstream 60868 45299447 ~ 45328509 (+)
XLOC_003759 pycr1b coding upstream 90853 45286911 ~ 45298524 (+)
XLOC_003766 NA coding downstream 22747 45412823 ~ 45413797 (+)
XLOC_003767 plaat1 coding downstream 31685 45421761 ~ 45425893 (+)
XLOC_003768 sos1 coding downstream 46627 45436703 ~ 45465268 (+)
XLOC_003369 CR854846.2 misc upstream 29266295 16122786 ~ 16123082 (+)
XLOC_003318 CR450764.6 misc upstream 32677381 12711700 ~ 12711996 (+)
XLOC_003317 CR450764.16 misc upstream 32695114 12693967 ~ 12694263 (+)
XLOC_003316 CR450764.11 misc upstream 32703778 12685304 ~ 12685599 (+)
XLOC_003315 CR450764.18 misc upstream 32709349 12679732 ~ 12680028 (+)
XLOC_003757 CABZ01078080.1 non-coding upstream 152643 45234480 ~ 45236734 (+)
XLOC_003754 NA non-coding upstream 169990 45212765 ~ 45219387 (+)
XLOC_003752 NA non-coding upstream 245537 45136015 ~ 45143840 (+)

Expression


Co-expression Network