XLOC_003762 (si:ch73-100l22.3)


Basic Information

Item Value
gene id XLOC_003762
gene name si:ch73-100l22.3
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 45339906 ~ 45351824 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00007240
TTATTGTCAAACTTACCTACAATATGTGACTGAATAAGAGCTAAATGTTAAGCTTGATCTTAAAATTATACTCTGAAGTGTTGTTTAGATTTAAACTGCTGCCTTATCAGTCCGCATCCGAAAGGTGCAGAACTCCAGTCCGTGTTTACCGGAAGCGCTCGAGTGTAAACAAACTCAACGTTCATAACGAGGAGACGCGCTTCATCCTCAGAGTTATGGAGAGTTATGAAGACTTCATACAGAGatgttataatagtaataatgatgatgaGGCTGAAGATGAGCCACACACACCTTTAACTACGTCATCTCTGATTGTGTTTCATGGAGCTTGTATTCTTCCTCCTGTGCTGAATGAGCAGCAGAGAGTCGAGATGAGGACATTGAGAGACACAGCAGTCAGTCTGATGAcgatgaagaggaggaagagggGAGAGGAAGAGTCTCAGTCCAGCTTTGCAGACGTGAGCATCAGCCATGCTGAACAGAACACCACCATCACAGACAGTGACATCATCACCTCAGCTCCTCCCGCTCTGCTCACATGTCACCCTCTGACGTCAACAGCTCATGATGACCGATCAGCCAATCAGCTGCGAGCTTCTCCAGAGGACCAATCACTGGACAGCACCCAGATCACGGTCCTGTTTGAGGGCGTCGGTCACAAGAACGACAGGTCACATGATGCGCTTGACAGCCAGACGGCGATGATGTCATCAGGGTACGTAACCAATGACAACACAGACCTCAGCTGGATGGAGGCAGCCGCTGTTCGCTCCCAGCTGACTGccacaggaagtgacatcatcaGCCACGCTCCAGTAGATGGAGCAATCCTAGAAGCGGAAGCTGATGAGGTTTCACCACTAAAAATGGCCGATGACCTTACAGACGCTGATGAAGGCCCGTATCGCATGAGTCTTCAAAACCTCCTGAAGAAATCCCAAGAGTACCGGCGGCGGCAGCGTCTCCTGCGCACGCAAGCTAAAGCGCTGAAGCCGTCCGCAGACGAGCACAGCCTGTCAGACAAAGAGAACGAGGAGCTTCCCAAACACATCTGGAAGACGGAGCTCAGGAAAGCCAGAGAGAAGAAGAAGGAGAAAGCAGATCTTATACACACAGACGTCTTCAaccaaaccaacacacacaccgCTAATCATGAAGACATCAGCGCTGTGTTTACTGCACTTCCTGTTCCAGCTAAACCTCTGTATGGCTCCAGAATGAAGCCGCTCAGTGTGTCCAGATCGCACTTAGCAGTGGATGATAAGTATGCAAATATCCCCACGCCGCAGTTCTGCTCGAGCCCGGTGCGCTGTAAGAAAGGAGGCGGGGCTTCTGCTCGCGTTCAGAAAGCTTTGAGCAGATCTGATCTGAGATCAGTGAATGATGGAGGATTAATGCAGACACAGCAGATCACTCAGCTGGAGCTCAACCTGTCCAGCCTCAAAACACTGATCTCAGACCTGGAGTCCACACTCACGCTCTCGCACGCCGACCAATCAGATAGCCCGGCTCATAACTGCGTCAAACGAATCGTCACGTTCGGTGGAGCAGTCCAGCAGGAGGTCATCGCAGGGGATTGTGGGATTGAGAAGCAGACCTCGCCTGTGGGCGTCCTCACTGATAACAGTAATCAGAGAACACATGCTGATGGTGAAGGGAGCTCTCTGATTGGCTCGTCTTATGATGTCGACGCCCCCTCCAGCTTGTGGAGTCAGCTGACCCCTGAGGTCGGAGGTCATGAGGGCGTGTCCCGGGTCAAGCGGAGGCTGCTGATGAATGAGGAGACGCACTGCAGCCCGAGCACAGCAGTTCTGCAGACGCAGGAGGACCACGTCACATTTCTGATGGAGGAAGAGCGCAGACAGCAGCAGGAACTACTGCAGtctctAGCGGTGCGGTACCAGTTTCTGCGGAGTGTGTCCTTCCCGTGTCCCAGTGCAGCCTCACGTCTGGAGGACACGCCGACCTCCATCCTCGCCTCATCTGTCTGCACACACACTGAGCTCACAGACGcccaggtgTTGTGTCTGGCTGCAGTGGTGAAGGGTTTTCTGACTCGTCGTCTCCTGCGCACTGAACGCGTCTCTCACATCATCAGGACCATCAAGGACACACAGATGTTCCTGCAGTCGTTCCAGTCGTCTGTCAGCTGCAGGAATGATGTGATGCTGCAAGAGCGCGTCACACTGCAGctgcgTTCTGCTCGTCTGGAGCTCCACCAGCTGATGTTCATCTCCAGCTCTTGTGAACAGATGCAGATGATCCGACAGGACCGAGAGCTGAGGCGAGAGCGCAGAACACACACGCATCCCAAAGGGAAGCTGTCTCTGTCTGACGCCACCAGAAAAGCCCTGGAGCGCAAGAAACTGCTCCTgatgcAGCAGAGGTCAGCTGACAGGAAGCGGTTATCTCCATCCACTGAGGAAAAGTGGAAACTGGTGCCAAAAATCTGCCGCGTCTCCAAGAAGAAAACGCCGACACACGGAGCTCCATCCCATTTGTATTGACCTTTATTTAGTGCTtttatttatgatgtttttatgGCAGTGCTGCCTTCACTGCTCACTGGTTTTCTGTTGTTGCACACTTTAATAAACGGTGCTAATCA
>TCONS_00007241
AGGTAAACTCTCACAAACGTCATTTATGATCAATATTAGCTCTCTACACCGGTATAAACTGTTCAGAAGCTGCTCGATTGGATTAATAGCGTGGGTTCAGTTGATTCTGAGTAATGAAGTTATGGAGAGTTATGAAGACTTCATACAGAGatgttataatagtaataatgatgatgaGGCTGAAGATGAGCCACACACACCTTTAACTACGTCATCTCTGATTGTGTTTCATGGAGCTTGTATTCTTCCTCCTGTGCTGAATGAGCAGCAGAGAGTCGAGATGAGGACATTGAGAGACACAGCAGTCAGTCTGATGAcgatgaagaggaggaagagggGAGAGGAAGAGTCTCAGTCCAGCTTTGCAGACGTGAGCATCAGCCATGCTGAACAGAACACCACCATCACAGACAGTGACATCATCACCTCAGCTCCTCCCGCTCTGCTCACATGTCACCCTCTGACGTCAACAGCTCATGATGACCGATCAGCCAATCAGCTGCGAGCTTCTCCAGAGGACCAATCACTGGACAGCACCCAGATCACGGTCCTGTTTGAGGGCGTCGGTCACAAGAACGACAGGTCACATGATGCGCTTGACAGCCAGACGGCGATGATGTCATCAGGGTACGTAACCAATGACAACACAGACCTCAGCTGGATGGAGGCAGCCGCTGTTCGCTCCCAGCTGACTGccacaggaagtgacatcatcaGCCACGCTCCAGTAGATGGAGCAATCCTAGAAGCG
>TCONS_00007242
ACCTGTCCAGCCTCAAAACACTGATCTCAGACCTGGAGTCCACACTCACGCTCTCGCACGCCGACCAATCAGATAGCCCGGCTCATAACTGCGTCAAACGAATCGTCACGTTCGGTGGAGCAGTCCAGCAGGAGGTCATCGCAGGGGATTGTGGGATTGAGAAGCAGACCTCGCCTGTGGGCGTCCTCACTGATAACAGTAATCAGAGAACACATGCTGATGGTGAAGGGAGCTCTCTGATTGGCTCGTCTTATGATGTCGACGCCCCCTCCAGCTTGTGGAGTCAGCTGACCCCTGAGGTCGGAGGTCATGAGGGCGTGTCCCGGGTCAAGCGGAGGCTGCTGATGAATGAGGAGACGCACTGCAGCCCGAGCACAGTTCTGCAGACGCAGGAGGACCACGTCACATTTCTGATGGAGGAAGAGCGCAGACAGCAGCAGGAACTACTGCAGtctctAGCGGTGCGGTACCAGTTTCTGCGGAGTGTGTCCTTCCCGTGTCCCAGTGCAGCCTCACGTCTGGAGGACACGCCGACCTCCATCCTCGCCTCATCTGTCTGCACACACACTGAGCTCACAGACGcccaggtgTTGTGTCTGGCTGCAGTGGTGAAGGGTTTTCTGACTCGTCGTCTCCTGCGCACTGAACGCGTCTCTCACATCATCAGGACCATCAAGGACACACAGATGTTCCTGCAGTCGTTCCAGTCGTCTGTCAGCTGCAGGAATGATGTGATGCTGCAAGAGCGCGTCACACTGCAGctgcgTTCTGCTCGTCTGGAGCTCCACCAGCTGATGTTCATCTCCAGCTCTTGTGAACAGATGCAGAT
>TCONS_00007243
cgcgcaggtgTTGTGTCTGGCTGCAGTGGTGAAGGGTTTTCTGACTCGTCGTCTCCTGCGCACTGAACGCGTCTCTCACATCATCAGGACCATCAAGGACACACAGATGTTCCTGCAGTCGTTCCAGTCGTCTGTCAGCTGCAGGAATGATGTGATGCTGCAAGAGCGCGTCACACTGCAGCCCAAAGGGAAGCTGTCTCTGTCTGACGCCACCAGAAAAGCCCTGGAGCGCAAGAAACTGCTCCTgatgcAGCAGAGGTCAGCTGACAGGAAGCGGTTATCTCCATCCACTGAGGAAAAGTGGAAACTGGTGCCAAAAATCTGCCGCGTCTCCAAGAAGAAAACGCCGACACACGGAGCTCCATCCCATTTGTATTGACCTTTATTTAGTGCTtttatttatgatgtttttatgGCAGTGCTGCCTTCACTGCTCACTGGTTTTCTGTTGTTGCACACTTTAATAAACGGTGCTAATC
>TCONS_00007244
ATTCCGAGATTAATGTAGAGTAAAGAAATGAATCTATGCCCAGCtataatagatatatatatttctataattataggtgggcatagattaattcTGGagagtttttgtcttttgttgaattgtgtgtttgtgttcagtcatGGGGATTATCTGTGTTTCAGCCCAAAGGGAAGCTGTCTCTGTCTGACGCCACCAGAAAAGCCCTGGAGCGCAAGAAACTGCTCCTgatgcAGCAGAGGTCAGCTGACAGGAAGCGGTTATCTCCATCCACTGAGGAAAAGTGGAAACTGGTGCCAAAAATCTGCCGCGTCTCCAAGAAGAAAACGCCGACACACGGAGCTCCATCCCATTTGTATTGACCTTTATTTAGTGCTtttatttatgatgtttttatgGCAGTGCTGCCTTCACTGCTCACTGGTTTTCTGTTGTTGCACACTTTAATAAACGG

Function

symbol description
si:ch73-100l22.3 Predicted to be involved in centriole replication; ciliary basal body organization; and negative regulation of centriole elongation. Predicted to act upstream of or within centrosome duplication and regulation of cytokinesis. Predicted to be active in centriole.

GO:

id name namespace
GO:0032053 ciliary basal body organization biological_process
GO:1903723 negative regulation of centriole elongation biological_process
GO:0032465 regulation of cytokinesis biological_process
GO:0051298 centrosome duplication biological_process
GO:0007099 centriole replication biological_process
GO:0005814 centriole cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-141222-74 Predicted to be involved in centriole replication; ciliary basal body organization; and negative regulation of centriole elongation. Predicted to act upstream of or within centrosome duplication and regulation of cytokinesis. Predicted to be active in centriole.

Ensembl:

ensembl_id ENSDARG00000101309

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00007240 False 2614 mRNA 0.52 11 45339906 45351824
TCONS_00007241 False 751 mRNA 0.49 4 45340115 45342655
TCONS_00007242 False 829 mRNA 0.57 6 45343245 45348696
TCONS_00007243 False 479 mRNA 0.51 4 45347961 45351823
TCONS_00007244 True 451 lncRNA 0.42 2 45350565 45351815

Neighbor

gene id symbol gene type direction distance location
XLOC_003761 NA coding upstream 4033 45331401 ~ 45335873 (+)
XLOC_003760 mafgb coding upstream 11397 45299447 ~ 45328509 (+)
XLOC_003759 pycr1b coding upstream 41382 45286911 ~ 45298524 (+)
XLOC_003758 aspscr1 coding upstream 64697 45255774 ~ 45275209 (+)
XLOC_003756 tmc6b coding upstream 95265 45233348 ~ 45244641 (+)
XLOC_003763 NA coding downstream 3031 45354855 ~ 45356339 (+)
XLOC_003764 srsf11 coding downstream 36302 45388126 ~ 45400146 (+)
XLOC_003765 CU459093.1 coding downstream 37553 45389377 ~ 45390076 (+)
XLOC_003766 NA coding downstream 60999 45412823 ~ 45413797 (+)
XLOC_003767 plaat1 coding downstream 69937 45421761 ~ 45425893 (+)
XLOC_003369 CR854846.2 misc upstream 29216824 16122786 ~ 16123082 (+)
XLOC_003318 CR450764.6 misc upstream 32627910 12711700 ~ 12711996 (+)
XLOC_003317 CR450764.16 misc upstream 32645643 12693967 ~ 12694263 (+)
XLOC_003316 CR450764.11 misc upstream 32654307 12685304 ~ 12685599 (+)
XLOC_003315 CR450764.18 misc upstream 32659878 12679732 ~ 12680028 (+)
XLOC_003757 CABZ01078080.1 non-coding upstream 103172 45234480 ~ 45236734 (+)
XLOC_003754 NA non-coding upstream 120519 45212765 ~ 45219387 (+)
XLOC_003752 NA non-coding upstream 196066 45136015 ~ 45143840 (+)
XLOC_003748 NA non-coding upstream 428687 44907969 ~ 44911219 (+)

Expression


Co-expression Network