XLOC_003764 (srsf11)


Basic Information

Item Value
gene id XLOC_003764
gene name srsf11
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 45388126 ~ 45400146 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00007245
ACGcaaagcttttattttgaaatttgccGCACACGCCGCCATGTTCTTGTAAGCGCGCGCTTCACACAGCAGCCCGAGCGCCATTACAGATCCGCAGTGATGCGCGCGTGAGGAGCAGGCCGCGACACACTTCATCCACTCCACGGAGGACAGATCGAGGCAAAATCGCGGATTTGGATGCATATTTACCGTCGCTGATCCAGGAAAATGGCGTCCAGCAGCACCAGCGTGATCCAGGTGACGAACGTGTCTCCGAGCAGCACCGCCGAGCAGATGAGGACTCTGTTCGGCTTCATCGGCAGCATCGACGAGCTCAGACTCTTCCCTCCAGATGATTCTCCCTTGCCTGTGACTTCACGTGTATGTTTTGTAAAGTTCCACGAGCCGGAGTCAGTCGGAGTATCGCAGCATCTGACGAACACAGTCTTCGTGGACCGAGCGCTGATCGTCGTCCCCTTCGCTGAAGGAGTGATTCCTGATGAGTCCAAGGCTATGTCTCTGCTGGCTCCGGCCAATGCCGTTGCAGGATTGCTTCCAGGAGGCGGACTCCTCCCCACACCCAACCCCGTCCCATCTATTGGTGGCGTCCCTCTCGGCGGTCTTGGAGGACCAAACTTGGACCCGATGGCAGCTCTGGCCATGGCAGCACCCAATATAAACCCACAGTCATTGTCAGCTGAGCAGCTCATGAAGCTCATGGCATCAATAGACCCCAAATTGAATCCTCTGGCCGCTGGGCTCAATCTGACCCCTGGACTGAAGGCAGACGCATCCAATAAAGAGATTGAAGAAGCCATGAAGAGAGTGAGAGAGGCGCAATCTCTGATCTCTGCTGCCATCGAGCCTGGAAGTAAGAAGGATGATAAACGAAAGCGCTCGAGATCGAGGTCCAGATCCAGACGCAGGAGATCCAGGTCCCGCTCCAGACACAGGCGCTCCAAGAGTCACTCCAGGCGGAGATCTCGCTCCAGGAGCAGGAGGAGGTCCAAGAGCCCCCGCAGGAGGAGATCTCACTCCAGAGACCGCAGCAGACGCTCCAGGTCCAGAGATCGAAGGAAGGATGAAAAGTACAGGAAACGGTCCAAAACTCCACCCAAGAGCTACAGCAGCGCCAGACGCTCCCGCAGCACCAGCCGGAAACGGCACAGAAGGAGTCGCAGCATGTCTCGATCACCCAAAAAATCCCGATCTCCCAAGAGAAAACTGTCTCGCTCGCCATCGCCACGCAGGCACAAGAAGGAGAAAAAGAAGGACAAGGACCGCGAGAGAGACCGTGACCGAGACCGCAAAGAAGACCGCGACAGAAACCGGGAAAAACGGGAACGTTCCACCAGCAAGAAGAGCAAAGATAAAGACAAGGATCGAGACCGAAAGTCTGACAGCGAGAAGGGAGATGTGAAGGTCACCAGAGACTATGATGAAGAGGAGCAGGGCTACGACAGCGAGCACGAAGAACACGAGAGGAATTCAGACGCTGCTTCATCACCGCACGCTAAAGAGCCGCTAGCAGACAGCGCAGACGACGCCGGACGCGGAGAGTCTGACGGAAACAGTGAAGACCAGCGAGACGAGGACATGGACATGAGCGACTGAAACAGCCCCTGATCAGCGTTTGAGATGTATTGATGGAGTTCAGATGCAGGAAAGCTCATCCTTCTGAACTGCTCCATTCCTTTTGGTTCTTTTAATGCATCTGCTGTATTCACTGGTACACGCTCGTCTTAAATGTTCCCGGATTTTAGAGCTGTTTCTTTCCTCACGGCTGATGTGGAATGgtgttatactgtatatttagtgTCAACTTCTCCCTGAAAATACCACCATTCGCTATGTCTGTCTGCGGTTTCTATTTAAAGCAATTACCCTCTAATTAAAAGTGCTTGGATGACTTGTCGAGCagtgttgatttatttttgtttttcattttaatgaaattgcatttgttttttataGTTAGCCTGAGTTAGTTGGAAAATGTTTGTCTTTTTAAAGTTGCCGAACGTTTGTGAAACTTCACGTAAACTGGATAACGTTTTCTCGCAGGTCCTTCAACAGTTCGCCTGTATCTGATTGTGTTTTTCTGTAGTGAACACACATCATAGACTGTAGTTTGCTAAGAAAATGACTTAACTGTACCCGTTTGCAATGTtacaaattgaaaataaaacttCATACAAAA
>TCONS_00007246
GCAGCCCGAGCGCCATTACAGATCCGCAGTGATGCGCGCGTGAGGAGCAGGCCGCGACACACTTCATCCACTCCACGGAGGACAGATCGAGGCAAAATCGCGGATTTGGATGCATATTTACCGTCGCTGATCCAGGAAAATGGCGTCCAGCAGCACCAGCGTGATCCAGGTGACGAACGTGTCTCCGAGCAGCACCGCCGAGCAGATGAGGACTCTGTTCGGCTTCATCGGCAGCATCGACGAGCTCAGACTCTTCCCTCCAGATGATTCTCCCTTGCCTGTGACTTCACGTGTATGTTTTGTAAAGTTCCACGAGCCGGAGTCAGTCGGAGTATCGCAGCATCTGACGAACACAGTCTTCGTGGACCGAGCGCTGATCGTCGTCCCCTTCGCTGAAGGTTTGTGCCACTCCTTTATTGTGTTTAAATGTTACACATAATCAATCCCTTCGCAGTGTTGATGACGGCTTTAGTGCAGTGAACTCCAGCGGCCGTCACACACACCTGAACGCAGTATGGGGACATTCACACAGAACGCGTTTCTTTTAAAGTGCTCTGCTTTTTGTGTTTTCGATGTAAAGGCGCACTTGATGGATGTGTGTGATCGTTACTCTTCTTTTTTTGTCAAGTTATAAGCAGTTGAAATTGTAGATGCAGCGCTGCTTGTTAATGTCGGtttcaaagcagtggaccaatcagaagagttGAGAAGTGGGACTGCTGCTGCAAGTTTGTTTAAAGTTGTGTTTTAATGCTGCGTCTTTAGTTTAGTTTTTCCCCGCG
>TCONS_00007247
CCCGAGCGCCATTACAGATCCGCAGTGATGCGCGCGTGAGGAGCAGGCCGCGACACACTTCATCCACTCCACGGAGGACAGATCGAGGCAAAATCGCGGATTTGGATGCATATTTACCGTCGCTGATCCAGGAAAATGGCGTCCAGCAGCACCAGCGTGATCCAGGTGACGAACGTGTCTCCGAGCAGCACCGCCGAGCAGATGAGGACTCTGTTCGGCTTCATCGGCAGCATCGACGAGCTCAGACTCTTCCCTCCAGATGATTCTCCCTTGCCTGTGACTTCACGTGTATGTTTTGTAAAGTTCCACGAGCCGGAGTCAGTCGGAGTATCGCAGCATCTGACGAACACAGTCTTCGTGGACCGAGCGCTGATCGTCGTCCCCTTCGCTGAAGCGAAGCAGCCGACCTGAATCGCTTGTTCATTATACAACTTATGAAACTTGAGAGCACATCCCAGTGGAGATCCGGCTGTGCTTGCTTACATTTGGTTCATGACTTAAAAAATCAAGTTCAGGAGTGATTCCTGATGAGTCCAAGGCTATGTCTCTGCTGGCTCCGGCCAATGCCGTTGCAGGATTGCTTCCAGGAGGCGGACTCCTCCCCACACCCAACCC
>TCONS_00007248
GCGCCATTACAGATCCGCAGTGATGCGCGCGTGAGGAGCAGGCCGCGACACACTTCATCCACTCCACGGAGGACAGATCGAGGCAAAATCGCGGATTTGGATGCATATTTACCGTCGCTGATCCAGGAAAATGGCGTCCAGCAGCACCAGCGTGATCCAGGTGACGAACGTGTCTCCGAGCAGCACCGCCGAGCAGATGAGGACTCTGTTCGGCTTCATCGGCAGCATCGACGAGCTCAGACTCTTCCCTCCAGATGATTCTCCCTTGCCTGTGACTTCACGTGTATGTTTTGTAAAGTTCCACGAGCCGGAGTCAGTCGGAGTATCGCAGCATCTGACGAACACAGTCTTCGTGGACCGAGCGCTGATCGTCGTCCCCTTCGCTGAAGTTCTTTTCCCTGGTTCTGCAAGTCCTGTAAACCAGGCCCAGCAGAAAATGCCACCCAACAGTTTTGTCTTCTGCAGCTTGTCCTGTTTCTCTCTCATAtgttctctctatctctctctctcagctctctctctctctctctggtgtgtgtgtgtgtgtgtg
>TCONS_00007249
TACAGATCCGCAGTGATGCGCGCGTGAGGAGCAGGCCGCGACACACTTCATCCACTCCACGGAGGACAGATCGAGGCAAAATCGCGGATTTGGATGCATATTTACCGTCGCTGATCCAGGAAAATGGCGTCCAGCAGCACCAGCGTGATCCAGGTGACGAACGTGTCTCCGAGCAGCACCGCCGAGCAGATGAGGACTCTGTTCGGCTTCATCGGCAGCATCGACGAGCTCAGACTCTTCCCTCCAGATGATTCTCCCTTGCCTGTGACTTCACGTGTATGTTTTGTAAAGTTCCACGAGCCGGAGTCAGTCGGAGTATCGCAGCATCTGACGAACACAGTCTTCGTGGACCGAGCGCTGATCGTCGTCCCCTTCGCTGAAGTGAACAAGGCAATTGCAGAGCCGGCAGATGTCTGAGAGTGACCCTctgctgccctgtagacaaatAAAAGCGGCGGCCCACTTCTTTTCCCTGGTTCTGCAAGTCCTGTAAACCAGGCCCAGCAGAAAATGCCACCCAACAGTTTTGTCTTCTGCAGCTTGTCCTGTTTCTCTCTCATAtgttctctctatctctctctctcagctctctctctctctctctggtgtgtgtgtgtgtgtgtgtg
>TCONS_00007251
TAATCAGACACGAGATAATCCACGTTCTTTTCCCTGGTTCTGCAAGTCCTGTAAACCAGGCCCAGCAGAAAATGCCACCCAACAGTTTTGTCTTCTGCAGCTTGTCCTGTTTCTCTCTCATAtgttctctctatctctctctctcagctctctctctctctctctggtgtgtgtgtgtCGAAGCAGCCGACCTGAATCGCTTGTTCATTATACAACTTATGAAACTTGAGAGCACATCCCAGTGGAGATCCGGCTGTGCTTGCTTACATTTGGTTCATGACTTAAAAAATCAAGTTCAGGAGTGATTCCTGATGAGTCCAAGGCTATGTCTCTGCTGGCTCCGGCCAATGCCGTTGCAGGATTGCTTCCAGGAGGCGGACTCCTCCCCACACCCAACCCCGTCCCATCTATTGGTGGCGTCCCTCTCGGCGGTCTT
>TCONS_00007252
TCTCTGTGTGCTTTATAGCGAAGCAGCCGACCTGAATCGCTTGTTCATTATACAACTTATGAAACTTGAGAGCACATCCCAGTGGAGATCCGGCTGTGCTTGCTTACATTTGGTTCATGACTTAAAAAATCAAGTTCAGGTGATAACATCTTGGCAGTGTGTCTAGTGTCATTTCTTTTCTTGTAGTATTGTGCACTTCATGCTATTGTTAAGGGACCTCATGTGTTAGCTTGCTCTGGCAAAGTGAGTACTGATGTCAGTGCACAttatcttgcaaaaaaaaaagaaagtttgagTTTGTgggtctgtctgtgtgtgcgtggaGAGCCGCGGCGTGCTTTAActgtgtgtttctgttctgcagGAGTGATTCCTGATGAGTCCAAGGCTATGTCTCTGCTGGCTCCGGCCAATGCCGTTGCAGGATTGCTTCCAGGAGGCGGACTCCTCCCCACACCCAACCCCGTCCCATCTATTGGTGGCGTCCCTCTCGGCGGTCTTGGAGGACCAAACTTGGACCCGATGGCAGCTCTGGCCATGGCAGCACCCAATATAAACCCACAGTCATTGTCAGCTGAGCAGCTCATGAAGCTCATGGCA

Function

symbol description
srsf11 Predicted to enable RNA binding activity. Predicted to act upstream of or within RNA splicing. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in nucleoplasm. Orthologous to human SRSF11 (serine and arginine rich splicing factor 11).

GO:

id name namespace
GO:0008380 RNA splicing biological_process
GO:0005654 nucleoplasm cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0003676 nucleic acid binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG:

id description
ko03041 Spliceosome

ZFIN:

id description
ZDB-GENE-030131-605 Predicted to enable RNA binding activity. Predicted to act upstream of or within RNA splicing. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in nucleoplasm. Orthologous to human SRSF11 (serine and arginine rich splicing factor 11).

Ensembl:

ensembl_id ENSDARG00000098574

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00007245 False 2179 mRNA 0.51 12 45388126 45400146
TCONS_00007246 False 782 lncRNA 0.50 2 45388194 45391791
TCONS_00007247 False 615 nonsense_mediated_decay 0.55 4 45388198 45393530
TCONS_00007248 False 550 mRNA 0.54 3 45388203 45392661
TCONS_00007249 False 626 processed_transcript 0.54 4 45388210 45392663
TCONS_00007251 False 436 processed_transcript 0.50 5 45392211 45394780
TCONS_00007252 True 600 lncRNA 0.49 3 45393067 45395292

Neighbor

gene id symbol gene type direction distance location
XLOC_003763 NA coding upstream 31787 45354855 ~ 45356339 (+)
XLOC_003762 si:ch73-100l22.3 coding upstream 36302 45339906 ~ 45351824 (+)
XLOC_003761 NA coding upstream 52253 45331401 ~ 45335873 (+)
XLOC_003760 mafgb coding upstream 59617 45299447 ~ 45328509 (+)
XLOC_003759 pycr1b coding upstream 89602 45286911 ~ 45298524 (+)
XLOC_003766 NA coding downstream 12677 45412823 ~ 45413797 (+)
XLOC_003767 plaat1 coding downstream 21615 45421761 ~ 45425893 (+)
XLOC_003768 sos1 coding downstream 36557 45436703 ~ 45465268 (+)
XLOC_003369 CR854846.2 misc upstream 29265044 16122786 ~ 16123082 (+)
XLOC_003318 CR450764.6 misc upstream 32676130 12711700 ~ 12711996 (+)
XLOC_003317 CR450764.16 misc upstream 32693863 12693967 ~ 12694263 (+)
XLOC_003316 CR450764.11 misc upstream 32702527 12685304 ~ 12685599 (+)
XLOC_003315 CR450764.18 misc upstream 32708098 12679732 ~ 12680028 (+)
XLOC_003757 CABZ01078080.1 non-coding upstream 151392 45234480 ~ 45236734 (+)
XLOC_003754 NA non-coding upstream 168739 45212765 ~ 45219387 (+)
XLOC_003752 NA non-coding upstream 244286 45136015 ~ 45143840 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
tiger barb (Puntius tetrazona) G80761 NA misc NC_056709.1 CM032078.1 11222347 ~ 11226622 (+)