RNA id: TCONS_00007252


Basic Information

Item Value
RNA id TCONS_00007252
length 600
lncRNA type retained_intron
GC content 0.49
exon number 3
gene id XLOC_003764
representative True

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 45388126 ~ 45400146 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TCTCTGTGTGCTTTATAGCGAAGCAGCCGACCTGAATCGCTTGTTCATTATACAACTTATGAAACTTGAGAGCACATCCCAGTGGAGATCCGGCTGTGCTTGCTTACATTTGGTTCATGACTTAAAAAATCAAGTTCAGGTGATAACATCTTGGCAGTGTGTCTAGTGTCATTTCTTTTCTTGTAGTATTGTGCACTTCATGCTATTGTTAAGGGACCTCATGTGTTAGCTTGCTCTGGCAAAGTGAGTACTGATGTCAGTGCACAttatcttgcaaaaaaaaaagaaagtttgagTTTGTgggtctgtctgtgtgtgcgtggaGAGCCGCGGCGTGCTTTAActgtgtgtttctgttctgcagGAGTGATTCCTGATGAGTCCAAGGCTATGTCTCTGCTGGCTCCGGCCAATGCCGTTGCAGGATTGCTTCCAGGAGGCGGACTCCTCCCCACACCCAACCCCGTCCCATCTATTGGTGGCGTCCCTCTCGGCGGTCTTGGAGGACCAAACTTGGACCCGATGGCAGCTCTGGCCATGGCAGCACCCAATATAAACCCACAGTCATTGTCAGCTGAGCAGCTCATGAAGCTCATGGCA

Function

GO:

id name namespace
GO:0008380 RNA splicing biological_process
GO:0005654 nucleoplasm cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0003676 nucleic acid binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG:

id description
ko03041 Spliceosome

ZFIN:

id description
ZDB-GENE-030131-605 Predicted to enable RNA binding activity. Predicted to act upstream of or within RNA splicing. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in nucleoplasm. Orthologous to human SRSF11 (serine and arginine rich splicing factor 11).

Ensembl:

ensembl_id ENSDART00000159764

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00007246 lncRNA upstream 1276 45388194 ~ 45391791 (+) False XLOC_003764
TCONS_00007250 lncRNA upstream 2991 45389377 ~ 45390076 (+) True XLOC_003765
TCONS_00008718 lncRNA upstream 36728 45354855 ~ 45356339 (+) True XLOC_003763
TCONS_00007244 lncRNA upstream 41252 45350565 ~ 45351815 (+) True XLOC_003762
TCONS_00008436 lncRNA upstream 57194 45331401 ~ 45335873 (+) True XLOC_003761
TCONS_00008719 lncRNA downstream 17531 45412823 ~ 45413797 (+) True XLOC_003766
TCONS_00007258 lncRNA downstream 59264 45454556 ~ 45456610 (+) False XLOC_003768
TCONS_00007248 mRNA upstream 406 45388203 ~ 45392661 (+) False XLOC_003764
TCONS_00007240 mRNA upstream 41243 45339906 ~ 45351824 (+) False XLOC_003762
TCONS_00007243 mRNA upstream 41244 45347961 ~ 45351823 (+) False XLOC_003762
TCONS_00007242 mRNA upstream 44371 45343245 ~ 45348696 (+) False XLOC_003762
TCONS_00007241 mRNA upstream 50412 45340115 ~ 45342655 (+) False XLOC_003762
TCONS_00007253 mRNA downstream 26469 45421761 ~ 45425893 (+) False XLOC_003767
TCONS_00007254 mRNA downstream 26914 45422206 ~ 45425752 (+) True XLOC_003767
TCONS_00007255 mRNA downstream 41411 45436703 ~ 45463766 (+) False XLOC_003768
TCONS_00007256 mRNA downstream 41417 45436709 ~ 45465268 (+) False XLOC_003768
TCONS_00007257 mRNA downstream 52920 45448212 ~ 45453725 (+) False XLOC_003768
TCONS_00007249 other upstream 404 45388210 ~ 45392663 (+) False XLOC_003764
TCONS_00007223 other upstream 541474 44851474 ~ 44851593 (+) True XLOC_003747
TCONS_00007206 other upstream 1057287 44335666 ~ 44335780 (+) True XLOC_003733
TCONS_00007205 other upstream 1057745 44328774 ~ 44335322 (+) True XLOC_003732
TCONS_00007204 other upstream 1058156 44324761 ~ 44334911 (+) False XLOC_003732

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
tiger barb (Puntius tetrazona) TU119444 True 4256 TUCP 0.42 2 NC_056709.1 11222347 ~ 11226622 (+)