RNA id: TCONS_00007256


Basic Information

Item Value
RNA id TCONS_00007256
length 3647
RNA type mRNA
GC content 0.53
exon number 14
gene id XLOC_003768
representative False

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 45436703 ~ 45465268 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GCTCCGCCCTTTCAGTATGACTTTTACAGTGAGGAGAACGCGCACAAGTGGAGAGGCCTGCTGGTGCCGTCACTCAACAAGgtgctTAATCAGGTGCACCCGAAGCTGTCGTCCCAGCAGGAGGCGCTGCAGTACATCGAGGGGCTGATCTTGGTGCTGCTCAACACACTCTGCCAGGCACAGCCTCGCACTGTACAGGATGTGGAGGAGCGTGTGCAGAGGAGTTTTCCACACCCGATAGAGAAATGGGCGATCGCAGATGCTCAGGCCGCCATcgagaagaggaagaggaggaaccCGCTGGCGCTGCCCGTGGACAAGATACATCCACTGCTCAAGGAGGTTCTGGGCTATAAGATCGACCACCAGGTGTCGGTGTACATCGTGGCGGTGCTGGAGTACATCTCTGCAGACATACTGAAGCTGGCTGGAAACTACGTCAGAAACATCCGGCACTATGAGATCTCACAGCAGGACATCACTGTGGCCATGTGTGCTGAtaagGTGGAGCAGTTCGACCTGATGACCCTCCACCCCATCGAGATCGCCCGCCAGCTCACACTGCTGGAGTCTGACTTCTACAGGGCGGTGCAGCCGTCAGAGCTGGTGGGAAGCGTCTGGACTAAAGAAGATAAAGAGATCAACTCTCCAAACCTGCTGAGGATGATCAGACACACCACCAACCTCACACTCTGGCTGGAGAAGTGTATAGTGGAGACGGAGAATGTGGAGGAGCGTGTGTCCGTGGTGTCGCGTATCATTGAGATCCTGCAGGTCTTTCAGGAGCTCAACAACTTCAATGGTGTGCTGGAGGTGGTGAGCGCCATGAACTCCTCACCCGTCTACAGGCTCGACCACACCTTCGAGcaaATCCCCAGCAGACAGAGGAAGATCCTGGAGGAAGCTCATGAGCTCAGTGAAGATCATTATAAGAAGTATCTGGCCAAGCTCAGGTCCATCAACCCACCCTGTGTGCCCTTCTTTGGCATTTATTTAACGAACATCTTGAAGACGGAGGAGGGAAACCCAGACTTCCTGAAGCGCCACGGCACTGAGCTGATCAACTTCAGCAAGAGGAGGAAAGTGGCCGAGATTACTGGAGAGATCCAGCAGTACCAGAACCAGCCCTACTGTCTGCGGGTGGAGAACGACATCCGGAAGTTCTTCGAGAACCTAAACCCGATGGAGGACATGATGGAGAAGGAGTTCACAGATTACCTGTTCAACAAATCTCTGGAGATCGAGCCGCGCAACGCACGCACACTGCCCAGATTCGCCAAGAAGTACAGCTGTCCTCTGAAGTCTCCGGGGGTCCGTCCGTCCGCGGTGCGGCCGGGAGCGATGCGACACCCGACGCCGCTGCAGAACGAGCCGCGCAAGATCAGCTACAGCCGCATCCCTGACAGCGAGACGGAGAGCAGCGCAGCGTCTGCACCAAACTCCCCCAGAACACCCCTGACACCCCCACCCGCATCCGCTGCATCCACTGACACCTGCAGTGTGTTCGACTCTCCACAGCAGCCCTCCAGCCCGTTCCACTCCaACAGCGAGTGTGTGTTCGCTCCGGTGGCTCTGCCGCACGGCCCACgatccTCTTCAGTGTCCTCTATGATGGGTTTTCTGAGGAATGATGATCCTCCAGTTCCTCCTCCTGTCCCGCCGCGCCGCCGGCCCGAGTCTGCCCCCGCCGAGTCCTCGCCCTCCAAGatgatgTCAACACACCTGGACAGTCCTCCTGCGATTCCCCCTCGTCAGCCGACCAGCAGTAAGGTGTATTCTCCTCGATACTCGCTGACGGATCCTCCGGAGAGCCCACCTCTGCTGCCGCCGCGGGAGCCGGTGCGGACCCCGGACGTGTTCTGCAGCTCGCCGTTACACCTGCAGCCGCCGCCGCCGGGCCGCCGCGCCCCTGAGCTGCAGGCCTTCTTCCCACCACAGACGCCCTCACCGTCACCGCTGGGGCCGCGGAAACACCCGGAGCCGCCGCCGGAGCCCCCACTGGGGCCGCCCGTCCCCCCGCGCCTCAGCACCGCAGGCCCGCCCGCACACATCCCCAAACTGCCCCCAAAAACATACAAGAGGGAGTCAGTGCACCGCGAGGGTCCGCCGCCGCCACTGCTGCTGGAGAACGCCAACcccacatgaacacacacacacactcacagactccACACGTGCGCTCACTGCGAGCAGGAGTGTGTTCAGactcttctgtctgtcctcatcTGTAGCTGTCTGACATCACTGACACATCCagaacagcagcacacacacacacacacacacacacacacacacacacactgtaaataatgcaCTGCAGAGGCGCGTGTCTCTTATTTCCAGCTTGTTTCTGGTCTAAATCTGGAGTCTGTTTAATCCTGAAGCATCTTCAGACGGGCCGGTGTTCAGGGGACATTAGGGAAGCTGAATAATCtgggtaatgtgtgtgttttctctgaaaTCAGATTATTTTACACAAACTCTCTTCATTTGGCCTCATTATGTCTAAAAATACACTCTATCTAGAGCTCATCTAGAAATGCTCCGGATGTGAggagttttagatatttggacttgaattGAGACACAAACTCTGAGTAagacagtgtgtgtgcgtgtgtgcgtgcgtgcgtgcgtgtgtgtgcgtgcgtgcgtgtgtgtgtgtgcatgcgtgtgtgtgcgtgcgtgcgtgtgtgtgtgtgcatgcgtgtgtgtgtgtgtgtgtgcactgcttTTGTGTTTGGAGTTTGATCTTGTTTCTAGTGTGAATATCTGAACCGTCTTAAAGACCCAGTTCACCCATCAGTTCACCCAGTTTTAATCATCAATCAAGTCTTCATTTCCTCCTCATTTAGtaaagtttcttctgttgaacactaaagaagatatttagaagaatgctgtaaaccggtaaccattgactttcatatgatttgttttgtcctacaatggaagtcaatggttaccggtttccaaccttcttcaaaatatcttcttcagtgttcaacagaggaaaggaACTCTTGAAGGTTTGGACACTCGAGGGAGCGTAAATCAAGAGGAATTGTTGATGTTGGGGTGAACTGACCCTGTAAATCAATCTTTTTTTTAGGCTAGTAAATGTTTGATTTTCAGAAATAAGACGTCAGTATTGAAGGAGACTTTGAAGCAAGCTTGTCAGACAAACATGTTTTTGGAATAATATATTGAGGTAAATGAGCTGAAGTGGAGAAACTCCCTATTCAAGACATGAATCAGTGTGGGTCCAGAAATGCTTCATGATTGAAGAGTCTGTAGATTCTCCGACTGAAAACACGGCAGACTCTGAGTGTGAGAAGCGCTTGCTCTGCAGTGTGTGAGCCGTTTTATTTCTCAGATTTGTGAggaaaaagtaaaaaatgcaGATCAGTTTTCAGAATAATGAAGTCAGAGCTGCAGGACTGGCGGGACTCCTCTGACTCTGATGTCGGATTGTTCAGGACTTCTGTTCTGCAGTGTGAGGTTGTAAATGTTGAGCTGCAGAcaggaggacacacacacacacacacacacacacacacacacacatgtgcatctTCTAGAGAAACACACACTGAGATTGTAACTCCAGCTGCAGGATCATAAAGTAGCACTGTGTGAAAGTA

Function

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0000786 nucleosome cellular_component
GO:0005085 guanyl-nucleotide exchange factor activity molecular_function
GO:0003677 DNA binding molecular_function
GO:0046982 protein heterodimerization activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070209-128 Predicted to enable DNA binding activity; guanyl-nucleotide exchange factor activity; and protein heterodimerization activity. Predicted to act upstream of or within small GTPase mediated signal transduction. Predicted to be part of nucleosome. Human ortholog(s) of this gene implicated in Noonan syndrome; Noonan syndrome 4; and gingival fibromatosis. Orthologous to human SOS1 (SOS Ras/Rac guanine nucleotide exchange factor 1).

Ensembl:

ensembl_id ENSDART00000173293

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00008719 lncRNA upstream 22912 45412823 ~ 45413797 (+) True XLOC_003766
TCONS_00007252 lncRNA upstream 41417 45393067 ~ 45395292 (+) True XLOC_003764
TCONS_00007246 lncRNA upstream 44918 45388194 ~ 45391791 (+) False XLOC_003764
TCONS_00007250 lncRNA upstream 46633 45389377 ~ 45390076 (+) True XLOC_003765
TCONS_00008718 lncRNA upstream 80370 45354855 ~ 45356339 (+) True XLOC_003763
TCONS_00007253 mRNA upstream 10816 45421761 ~ 45425893 (+) False XLOC_003767
TCONS_00007254 mRNA upstream 10957 45422206 ~ 45425752 (+) True XLOC_003767
TCONS_00007245 mRNA upstream 36563 45388126 ~ 45400146 (+) False XLOC_003764
TCONS_00007248 mRNA upstream 44048 45388203 ~ 45392661 (+) False XLOC_003764
TCONS_00007243 mRNA upstream 84886 45347961 ~ 45351823 (+) False XLOC_003762
TCONS_00007251 other upstream 41929 45392211 ~ 45394780 (+) False XLOC_003764
TCONS_00007247 other upstream 43179 45388198 ~ 45393530 (+) False XLOC_003764
TCONS_00007249 other upstream 44046 45388210 ~ 45392663 (+) False XLOC_003764
TCONS_00007223 other upstream 585116 44851474 ~ 44851593 (+) True XLOC_003747
TCONS_00007206 other upstream 1100929 44335666 ~ 44335780 (+) True XLOC_003733

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
bowfin (Amia calva) AMCG00001409 True 4328 mRNA 0.52 21 CM030143.1 2110416 ~ 2167344 (-)