RNA id: TCONS_00008719


Basic Information

Item Value
RNA id TCONS_00008719
length 621
lncRNA type intronic
GC content 0.48
exon number 2
gene id XLOC_003766
representative True

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 45412823 ~ 45413797 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTGTGTAGTGCGCATATTACTGCATACTACACACCACAGGCTGCGCACTACACACTGCATTCTACACACTAGGACTGCTCGCAACACACTGCATACTACACACCACAGACTGTGCACTACACACTGCATACTACACACCACGGACTGTGCACTACACACTGTATTCTACACACTAGGACTGCTCGCTACACACTGCATACTACACACCATGGACTGTGCACTACACACTGCATACTACACACTAGGACTGCTCGCAACACACTGCATACTACACACCACGGACTGCGCACTACACACTGTATTCTACACACTAGGACTGCTCACTACACACTGCATACTACACACTACGGATTGCACACCAGAGACTGCGCTCTACACACTGCATACTACACACCACGGACTGTGCACTACACACTGCATACTACACACTAGGACTGCGCACTACACACTGCATACTACACACCACGGACTGTGCACTACACAACGCATACTACACACTAGGACTGCGCACTACACACTGCATACTACACATTTTGCACAGCATACTACCCATTACACTCTGCATACTACACCCTGCATACTACACACACCTAAGACTGAATTTTACACATGGCTGAATTC

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00007252 lncRNA upstream 17531 45393067 ~ 45395292 (+) True XLOC_003764
TCONS_00007246 lncRNA upstream 21032 45388194 ~ 45391791 (+) False XLOC_003764
TCONS_00007250 lncRNA upstream 22747 45389377 ~ 45390076 (+) True XLOC_003765
TCONS_00008718 lncRNA upstream 56484 45354855 ~ 45356339 (+) True XLOC_003763
TCONS_00007244 lncRNA upstream 61008 45350565 ~ 45351815 (+) True XLOC_003762
TCONS_00007258 lncRNA downstream 40759 45454556 ~ 45456610 (+) False XLOC_003768
TCONS_00007245 mRNA upstream 12677 45388126 ~ 45400146 (+) False XLOC_003764
TCONS_00007248 mRNA upstream 20162 45388203 ~ 45392661 (+) False XLOC_003764
TCONS_00007240 mRNA upstream 60999 45339906 ~ 45351824 (+) False XLOC_003762
TCONS_00007253 mRNA downstream 7964 45421761 ~ 45425893 (+) False XLOC_003767
TCONS_00007254 mRNA downstream 8409 45422206 ~ 45425752 (+) True XLOC_003767
TCONS_00007255 mRNA downstream 22906 45436703 ~ 45463766 (+) False XLOC_003768
TCONS_00007256 mRNA downstream 22912 45436709 ~ 45465268 (+) False XLOC_003768
TCONS_00007257 mRNA downstream 34415 45448212 ~ 45453725 (+) False XLOC_003768
TCONS_00007251 other upstream 18043 45392211 ~ 45394780 (+) False XLOC_003764
TCONS_00007247 other upstream 19293 45388198 ~ 45393530 (+) False XLOC_003764
TCONS_00007249 other upstream 20160 45388210 ~ 45392663 (+) False XLOC_003764
TCONS_00007223 other upstream 561230 44851474 ~ 44851593 (+) True XLOC_003747
TCONS_00007206 other upstream 1077043 44335666 ~ 44335780 (+) True XLOC_003733