RNA id: TCONS_00007250


Basic Information

Item Value
RNA id TCONS_00007250
length 558
lncRNA type sense_overlapping
GC content 0.30
exon number 2
gene id XLOC_003765
representative True

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 45389377 ~ 45390076 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CGACTTTCCATAGAGATGTGGTTATCAGCTTTTCTTTTTAAACAATGCATTAGTTTCAAATACAATACTCATAACTGCATgctaattaatcagttttaatcaATTCTactttactatttttaaaattttaaatgtgcaaatataaaatcaaCATCATCTCAATCTTGGGGGAGAGTAAATGAGTAGATTTACTACTaaattatttgcttatttttttgtgATCTCGCTTTAAAGCTGatgaacattttacagtaatttgacaTATAAAGCTTCATAGTTGTGGAGCAGGTTAAATATGTCAAGCGCattgtgtattttattatattttttgtagtaATTTTGTTGATTTGGTTTAGTTTGCATTTCATTGTTGAAGGATGTGATAGACTTTAGAGCAGATTTAGAGCAGATTTACTGGTGCAAGGCAAAGAAGAGACAACCCAACTCTAAACAACTGAAAGGGAACTTTGAAGAAAGCAGGCTTCTATTCACATTTTAATAGTACAGTAATTAAGCCTGCAATGTAAAGGCTAGCTCTGAAAATATTTAGTTTACAAC

Function

GO:

id name namespace
GO:0060359 response to ammonium ion biological_process
GO:0061959 response to (R)-carnitine biological_process
GO:0033273 response to vitamin biological_process
GO:0031667 response to nutrient levels biological_process
GO:0009991 response to extracellular stimulus biological_process

KEGG: NA

Ensembl:

ensembl_id ENSDART00000170358

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00008718 lncRNA upstream 33038 45354855 ~ 45356339 (+) True XLOC_003763
TCONS_00007244 lncRNA upstream 37562 45350565 ~ 45351815 (+) True XLOC_003762
TCONS_00008436 lncRNA upstream 53504 45331401 ~ 45335873 (+) True XLOC_003761
TCONS_00007232 lncRNA upstream 152643 45234480 ~ 45236734 (+) True XLOC_003757
TCONS_00008717 lncRNA upstream 169990 45212765 ~ 45219387 (+) True XLOC_003754
TCONS_00007252 lncRNA downstream 2991 45393067 ~ 45395292 (+) True XLOC_003764
TCONS_00008719 lncRNA downstream 22747 45412823 ~ 45413797 (+) True XLOC_003766
TCONS_00007258 lncRNA downstream 64480 45454556 ~ 45456610 (+) False XLOC_003768
TCONS_00007240 mRNA upstream 37553 45339906 ~ 45351824 (+) False XLOC_003762
TCONS_00007243 mRNA upstream 37554 45347961 ~ 45351823 (+) False XLOC_003762
TCONS_00007242 mRNA upstream 40681 45343245 ~ 45348696 (+) False XLOC_003762
TCONS_00007241 mRNA upstream 46722 45340115 ~ 45342655 (+) False XLOC_003762
TCONS_00007237 mRNA upstream 60868 45299447 ~ 45328509 (+) False XLOC_003760
TCONS_00007253 mRNA downstream 31685 45421761 ~ 45425893 (+) False XLOC_003767
TCONS_00007254 mRNA downstream 32130 45422206 ~ 45425752 (+) True XLOC_003767
TCONS_00007255 mRNA downstream 46627 45436703 ~ 45463766 (+) False XLOC_003768
TCONS_00007256 mRNA downstream 46633 45436709 ~ 45465268 (+) False XLOC_003768
TCONS_00007257 mRNA downstream 58136 45448212 ~ 45453725 (+) False XLOC_003768
TCONS_00007223 other upstream 537784 44851474 ~ 44851593 (+) True XLOC_003747
TCONS_00007206 other upstream 1053597 44335666 ~ 44335780 (+) True XLOC_003733
TCONS_00007205 other upstream 1054055 44328774 ~ 44335322 (+) True XLOC_003732
TCONS_00007204 other upstream 1054466 44324761 ~ 44334911 (+) False XLOC_003732
TCONS_00007203 other upstream 1063085 44324761 ~ 44326292 (+) False XLOC_003732
TCONS_00007251 other downstream 2135 45392211 ~ 45394780 (+) False XLOC_003764

Expression Profile

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