RNA id: TCONS_00007254


Basic Information

Item Value
RNA id TCONS_00007254
length 1166
RNA type mRNA
GC content 0.44
exon number 4
gene id XLOC_003767
representative True

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 45421761 ~ 45425893 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTTACTCCAGCATTCTCTGGCTCTTTTCAGCTGTACACACTTCACATCAGTCAACATATTCACACGTGTGTTCATTTCCGTGTTaATGTGCAGAATTATGCTGTGGGACGATGGATAATCAACAGAGAAGAACTGATAATGTGAGTAAACAAGCTGatcttaaaattaataattaatttataatgtatGCAGATGAAAAATGATGCATCAGAGTTCCTAAAGACAGACAACTGAGTTTATTATAGCGGTATTTATTGTAGCCTATATTTAGATGTGTGCTTTATAATGATCGTGTTGTCCTTTACATTGCGGGCAAAcaaatatatactttatttatttattatattaataactaCCTAATGATGATTTTGCTAATGTAGAAGAGATTTGTCTGTGTTTGATCACTTCTGTAGTAATTATGATCAGCAGAATGCATATGTTAGAGGAGCTCAACACTTCGGTTTCTCTCAGATGGATCAGTTAGAGTGTTTGTTCAGGTTAAAAGAGGCTAATTGTACAAtattgttgtttgtgtgtttcctcACTGCAAAACAACACAAGACATGCAGAGACTCTGTGTGAAAAGCTGCACAaattcagtcatttagggtggtaGAAATGTTCTGTGAAATGCTGAAGTGTTCGAGTGTGTCCAGATGGCGTCAGGTGAAACTGATCACCTTCAGTGTGTGGAGGAGCCTCAGCCAGGAGACCTCATCGAGATCTTCAGACCGGCCTATCAGCACTGGGCTCTGTATCTGGGAGACGGATACATCATCAACCTCACACCTGTcgATGAAGGTCAGGCCACTGCTGTGTCCAGTGTGAAGTCGGTGTTCAGCCGTAAAGCTGTGGTCCGCATGCAGCTCTTGAAGGAGGTGGTGGGTGCAGATTCATACAGGATCAATAATAAATATGATGACGATCACACGCCGCTGCCCGTCTCGGAGATCATCCAGCGGGCACAGATGCTCATCGGCCAGGAGGTGTCGTATGACCTGCTGGGCAGCAACTGTGAGCACTTCGTCACTCTGCTCCGCTACGGTGAAGGAGTGTCCGAACAGGCATCGCGGGCTATCGGTGCCATCAGTCTGGTGACAGCAGCCGCAAGTGCTTTCTCAGTGCTGGGTCTCATCAACACCCGATCCAGAAACAGACCCTTCTAG

Function

GO:

id name namespace
GO:0070292 N-acylphosphatidylethanolamine metabolic process biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005737 cytoplasm cellular_component
GO:0016410 N-acyltransferase activity molecular_function
GO:0004623 phospholipase A2 activity molecular_function
GO:0008970 phospholipase A1 activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040718-330 Predicted to enable N-acyltransferase activity; phospholipase A1 activity; and phospholipase A2 activity. Predicted to be involved in N-acylphosphatidylethanolamine metabolic process. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in cytoplasm. Orthologous to human PLAAT1 (phospholipase A and acyltransferase 1).

Ensembl:

ensembl_id ENSDART00000182548

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00008719 lncRNA upstream 8409 45412823 ~ 45413797 (+) True XLOC_003766
TCONS_00007252 lncRNA upstream 26914 45393067 ~ 45395292 (+) True XLOC_003764
TCONS_00007246 lncRNA upstream 30415 45388194 ~ 45391791 (+) False XLOC_003764
TCONS_00007250 lncRNA upstream 32130 45389377 ~ 45390076 (+) True XLOC_003765
TCONS_00008718 lncRNA upstream 65867 45354855 ~ 45356339 (+) True XLOC_003763
TCONS_00007258 lncRNA downstream 28804 45454556 ~ 45456610 (+) False XLOC_003768
TCONS_00007245 mRNA upstream 22060 45388126 ~ 45400146 (+) False XLOC_003764
TCONS_00007248 mRNA upstream 29545 45388203 ~ 45392661 (+) False XLOC_003764
TCONS_00007240 mRNA upstream 70382 45339906 ~ 45351824 (+) False XLOC_003762
TCONS_00007255 mRNA downstream 10951 45436703 ~ 45463766 (+) False XLOC_003768
TCONS_00007256 mRNA downstream 10957 45436709 ~ 45465268 (+) False XLOC_003768
TCONS_00007257 mRNA downstream 22460 45448212 ~ 45453725 (+) False XLOC_003768
TCONS_00007259 mRNA downstream 35667 45461419 ~ 45463968 (+) False XLOC_003768
TCONS_00007260 mRNA downstream 36101 45461853 ~ 45463515 (+) False XLOC_003768
TCONS_00007251 other upstream 27426 45392211 ~ 45394780 (+) False XLOC_003764
TCONS_00007247 other upstream 28676 45388198 ~ 45393530 (+) False XLOC_003764
TCONS_00007249 other upstream 29543 45388210 ~ 45392663 (+) False XLOC_003764
TCONS_00007223 other upstream 570613 44851474 ~ 44851593 (+) True XLOC_003747
TCONS_00007206 other upstream 1086426 44335666 ~ 44335780 (+) True XLOC_003733

Expression Profile

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