XLOC_003742 (rbm34)


Basic Information

Item Value
gene id XLOC_003742
gene name rbm34
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 44617021 ~ 44637842 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00007216
GGCCCAGCCCTACCTAGTAGGACTAGAATGACAGTAATGAATGACCTGAGATGCAGCTCCTGCAGGGAGTCCAGCTGCTCCGTAATGGCTGCCAGCACTTCCCATGAGCTCAGCAGATTTCCAGAAAGATCCAGAGACTGAACGACTGAGAGACgctgttaaaggtgctgtatAAATATCGTCCAGATCATTCTACATAGACATGCGCTCTGAGTGACATCATGAAGAAGGAGATTAAAAAGAGCAGTGATGGTGGCGATGCTGGAGGATATAAAGTCGGTCAGGTGTCCGGCAGCCTCTTCCCAGAAAAACACAAATCCTCAGCTCTGTCTTCATTATTCGCCTCCACTTCATCTGCAAATACTTTAGTGTTCCTTCCTCCACCAAAAATTGAGCCTAAAGTCACGCCTGCAGTGTCTGATAATGCAGTAGTCAAGAGCAAAGATCAGGTTcagaaacagaagaaaaaaccaAAGACTCTTTCAGCTGCTGAGAAGAAACTCCAGGACAGGGAAAGCGCTCTACAGAACGCTGATGAAGAAGGACAAGCGAGTGCAAAGAAAGTCAAACGTAAACGTGCAGACGGAGGAGAAGACGAAGAAGAGCGACCCACCAAACACAAGAAAACCGTCAAGTTCAATGCGGAGGAACGGCTCAAAATGAAACGAACGGTGTTTGTGGGAAATCTCCCGTCCAGCTGCAAGAAGAAGgATCTTCTGTCCGTGTTCAAGAAGTCTGGAGTCATCGAATCGGTTCGCTTTCGTTCAGTGATTCGGGAAGATCCAACTATGTCCCGCAAAGTGGCTGCCATCCAGAGAAAAGTACATCCcaagaaacaaaatattaatgCTTACATCGTCTTCAAAGAGGAAGAATCAGCCACTGATGCTCTCAAATGgaatggCCATGAGATTCAGGCAGGTTTCTACATACGAGTGGACCGAGTTTCTCAGCACAGCAAACATGATCATAAACGCTCCATATTTGTGGGGAATTTACCGTACGATATAAGTGAGCTTCCGCTGCAGAATCACTTCCAGGAGTGTGGAAACATCGAGGCCGTGCGTTTGGTGCGAGACAGGGATTCTGGCATGGGGAAAGGCTTCGGCTATGTCCTTTTTGAGAGCCCAGACTCAGTGATGTTAGCATTGAAACTCAACGGCTCGACATTACAGCAGCGAAAGATCCGGGTGAAACGCTCCGTGAAGaaggagaaagaaaagaaaactccACCAGGACGAAAAGCAGAAGGACAGCGAACGGGAGGAGGACTCAAAGGGCCGAAGCAGGAGTTCAGAAATAACACGGGCAGAAAAAACTTCACCAAGAACCCCAGAAATAAACCAACACAAGCGTCCTCGTTTAAAGGAGAAATGGCGGATCCCACTGCCAAAAGAGGAAAACCGCAGAAGAAGAAGTTCAAGCACAAGAAGAAGAAACACAGCGGTCATGTTTAGGTTTATCATGTATACGTGTGTTTTAATTGTGCTGAttaaaaatactgactgattaa
>TCONS_00007217
TATAGCTCTGTATTCCTCTATTTTCCCTACAGATTGTTAGATAAGTGACGTCCGCGATTACTTACTCGTGTCTGTATATATTAAATTAGCTTTATAAAACATCTCGTATGAGCTTAAACAAGCAGAGAATGTGAATTAGGAGCGGCGACTTACATGTTAAACAATAATAACGGAATGAAAACATCTCCGCATCATTCTCACCTGCAGAACCGGCAACCGGATGTAGCATCACAAGGTTTCGCGCCTAATGCTGCGCCGACGAGAAACATTACAGTTGCAAAAGCGCTGCTGTTACTGAGTTTGTGTCATGTAGATttccttttaaaaaacaaatgctattagAGTGATGTGTAAACCTTATTATATTCATCAAGAGCCGCGTATTTTGGTGTGCCACTCGAGGAATATTTCTCACTAGGAACTGATTATGAGTGTTTGTGGTTTCCAAGAGACAGAAAAACTGCGCATGCGCGGGGCAGCGAAATAAACGTGTTTATGTGTGAAACTTCAGCACCTCGCTGTAACTTTAATTACGCTTAACTTACAGAAATATCGTCCAGATCATTCTACATAGACATGCGCTCTGAGTGACATCATGAAGAAGGAGATTAAAAAGAGCAGTGATGGTGGCGATGCTGGAGGATATAAAGTCGGTCAGGTGTCCGGCAGCCTCTTCCCAGAAAAACACAAATCCTCAGCTCTGTCTTCATTATTCGCCTCCACTTCATCTGCAAATACTTTAGTGTTCCTTCCTCCACCAAAAATTGAGCCTAAAGTCACGCCTGCAGTGTCTGATAATGCAGTAGTCAAGAGCAAAGATCAGGTTcagaaacagaagaaaaaaccaAAGACTCTTTCAGCTGCTGAGAAGAAACTCCAGGACAGGGAAAGCGCTCTACAGAACGCTGATGAAGAAGGACAAGCGAGTGCAAAGAAAGTCAAACGTAAACGTGCAGACGGAGGAGAAGACGAAGAAGAGCGACCCACCAAACACAAGAAAACCGTCAAGTTCAATGCGGAGGAACGGCTCAAAATGAAACGAACGGTGTTTGTGGGAAATCTCCCGTCCAGCTGCAAGAAGAAGgATCTTCTGTCCGTGTTCAAGAAGTCTGGAGTCATCGAATCGGTTCGCTTTCGTTCAGTGATTCGGGAAGATCCAACTATGTCCCGCAAAGTGGCTGCCATCCAGAGAAAAGTACATCCcaagaaacaaaatattaatgCTTACATCGTCTTCAAAGAGGAAGAATCAGCCACTGATGCTCTCAAATGgaatggCCATGAGATTCAGGCAGGTTTCTACATACGAGTGGACCGAGTTTCTCAGCACAGCAAACATGATCATAAACGCTCCATATTTGTGGGGAATTTACCGTACGATATAAGTGAGCTTCCGCTGCAGAATCACTTCCAGGAGTGTGGAAACATCGAGGCCGTGCGTTTGGTGCGAGACAGGGATTCTGGCATGGGGAAAGGCTTCGGCTATGTCCTTTTTGAGAGCCCAGACTCAGTGATGTTAGCATTGAAACTCAACGGCTCGACATTACAGCAGCGAAAGATCCGGGTGAAACGCTCCGTGAAGaaggagaaagaaaagaaaactccACCAGGACGAAAAGCAGAAGGACAGCGAACGGGAGGAGGACTCAAAGGGCCGAAGCAGGAGTTCAGAAATAACACGGGCAGAAAAAACTTCACCAAGAACCCCAGAAATAAACCAACACAAGCGTCCTCGTTTAAAGGAGAAATGGCGGATCCCACTGCCAAAAGAGGAAAACCGCAGAAGAAGAAGTTCAAGCACAAGAAGAAGAAACACAGCGGTCATGTTTAGGTTTATCATGTATACGTGTGTTTTAATTGTGCTGAttaaaaatactgactgattaaCTGGACTCCAGAGCTGAAGAGCATTGATTTGGTCATCCTGTGAGGGATTATCTGGATAATAATGTCAGATAAAGAAGAATCTGGGCCGTGTTCACAAAGCGTTTTAAGGATGAAAGTAGCTCCAAACTTTCTGATTTAGTCCACAGGCATAGGCGGAGTGTGTGTAAGGCTGGGGAAGGCttaagcccaatcccaattctaccccttagccctacccctcattttgcgcgtTCCCCTCAAGGAaaagtggtgtcccaattctcttcagcttaaaggcgtagggcaggcatgtccaaactcggtcctggagggccggtgtcctgcaaagtttagttccaaccccaatcagacacacctgggctacctaatccagctcttactaggctttctagaaacatcttgcaggtgtgttgaggctaaaatctgcaggacaccggccctccaggaccgagtttggacatccctggcgttgggctaaggggaagaggtgaatagcccttcgaacgaagattatttaggaccacactcaaaaccaaggggtaagaaaatttcccagaatgcaccatCTACAACAGCAGGATCGCAGCACCCAGAGGTCAGGAGATTtataaatcagtattttttttgtcattgcgaatttttaataacaaacaagcacatgttttaatacactcATAAccaccgtcatgctttaaaaaatgctgaaataaaaaccgctaaatttcatGATCTATAATCCTTAATAATACCTCCTGTCCAGCAGTCCCACAGCATGCTGACACTTGTTGACTCTGGAATGCCCTGTcggaaaagtctagtggctgggaatgagctgtttgcagtgtctgctataatgttcatgctgtttttggtgtgtttacattgatgaatgtGTTACAGTGATAATATATctgccttcagtgatttcatgaagataaacataaaaaataacacaactggaatcactacagcagtcgccatcgtctgatctcaaatGATGCTACAGAGATCGTGATGACATGTGATGACGCTTGCAGgagctgtagtgctgtcccaattcttaggggtaagtTTCTTAATTCTTAAGGGTAAAGCCTCCTCCTTTTCCAGAGACCACGGAGTTGGCAGCAAAGAAAATAACTCACTGAAAACATGTAAAGGTGTAAGGTAGAAttatatgaatgtatttaaatgttaatgattACATGAATACTTCAGTCATTGTAAGTTTGTCAATCAAATTTAAAATCCCCCTCCATACAAAAATGGACCTTTGCACTGAAGAGCGCTGTTTATTACTGGAGTTCACAGCAGCTCTGAAAACCAAACCAAAAGTGCTGGCCAGCGAACTATTCTGATTTGCTGGACAAGGACATAAGTATACATCAAGCCATACTTATACAACCTCAACACATCCACTCCCAAgattaaaatgaataaagaactttaaaatactgattaaaaAGTCCCCAAACATCagcagcattattattattaatcaggggtcaccaatctcggtcctggaggtctggtgtcctgcatagtgtagctccaacttgcctcaacacacctgcctggatgtttcaagtataccgagtaagagcttgattagtttgatcaggtgtgtttgattagggttggagctaaaatctgcaggacaccggccctctaggaacaagtttggtgtcccctgttattaataataaatagtcgAATACACAAAGCAACTTTATAAATCCACACCTGGctctgttaaatagaaaatttaaataaatcaaatttaattaaatgcatttaaataatcttaattaaaaaaaaggttttgaattATTAATTCCTGCCAAATTTTTCATGAAGATTTGTGcagcaaataaaatatttttatgcaaataaatgttctataaatacaaatttggccatttttgtacatttttctaaataaatgtaaaaatcctTGATATTAAAAATCCTCATAGAAAATGTAGTCTTTGATATTCAAtatctttaatattaaaaataattaaaaattctaaatcttttatatttatattttaaaaatatttttatttaaaaatgtaagttttttttgaAGCTCTTAAATGCATATTTGCTTAATTATTTTCTAAGAAAATTGGTTATTACTGCCAGTTTTTCATGCACCACATCATCTTGTCCCTAAAAAATAAATTGCCAATATCAATAAAGTaaacagtgtttcccaaccttgttcctaaaggcacaccaacagtacacattctCAAcctctgatcaaacacacctgaatcagagctgtagaagagactccaaaacctgaagggAGACGTTTAACATATGTACTGCTGGTGCTCAAAACAACAAATGAAACACGAACATCctaatctgaatgaatgaaatattctcaTTAAATACTTTGTACTTTACATAGTTGGATGCACAAATGAATTGAACACAGCGATTATTCGACATTGATTtatttggattttaaaaaaagaggaaactcCGAGCACCTTTAATCGTGCTTCACCACATCAGACGTCTCACAGccaataaaaataacttaaatacaTGAACACAGACAAATGACTTCTCCATTTCCCCATCACAGActaaagacagtgtaaacatCGCGTCTACAAGCCTTCGCGATATTCAATGACTTCCAAAACTCAACACTGTTAGTAAATCAAATGACTCAAATAGATGAGTGTTAGCGGGTCATGCTTGTCTTCTGTCATTCAAACGCACTGAAACACCATCACCAAACTGATGTCTCTCACTTCTG
>TCONS_00007218
AGAAAAACTGCGCATGCGCGGGGCAGCGAAATAAACGTGTTTATGTGTGAAACTTCAGCACCTCGCTGTAACTTTAATTACGCTTAACTTACAGAAATATCGTCCAGATCATTCTACATAGACATGCGCTCTGAGTGACATCATGAAGAAGGAGATTAAAAAGAGCAGTGATGGTGGCGATGCTGGAGGATATAAAGTCGGTCAGGTGTCCGGCAGCCTCTTCCCAGAAAAACACAAATCCTCAGCTCTGTCTTCATTATTCGCCTCCACTTCATCTGCAAATACTTTAGTGTTCCTTCCTCCACCAAAAATTGAGCCTAAAGTCACGCCTGCAGTGTCTGATAATGCAGTAGTCAAGAGCAAAGATCAGGTTcagaaacagaagaaaaaaccaAAGACTCTTTCAGCTGCTGAGAAGAAACTCCAGGACAGGGAAAGCGCTCTACAGAACGCTGATGAAGAAGGACAAGCGAGTGCAAAGAAAGTCAAACGTAAACGTGCAGACGGAGGAGAAGACGAAGAAGAGCGACCCACCAAACACAAGAAAACCGTCAAGTTCAATGCGGAGGAACGGCTCAAAATGAAACGAACGGTGTTTGTGGGAAATCTCCCGTCCAGCTGCAAGAAGAAGgATCTTCTGTCCGTGTTCAAGAAGTCTGGAGTCATCGAATCGGTTCGCTTTCGTTCAGTGATTCGGGAAGATCCAACTATGTCCCGCAAAGTGGCTGCCATCCAGAGAAAAGTACATCCcaagaaacaaaatattaatgCTTACATCGTCTTCAAAGAGGAAGAATCAGCCACTGATGCTCTCAAATGgaatggCCATGAGATTCAGGCAGGTTTCTACATACGAGTGGACCGAGTTTCTCAGCACAGCAAACATGATCATAAACGCTCCATATTTGTGG
>TCONS_00007219
AAACTGCGCATGCGCGGGGCAGCGAAATAAACGTGTTTATGTGTGAAACTTCAGCACCTCGCTGTAACTTTAATTACGCTTAACTTACAGAAATATCGTCCAGATCATTCTACATAGACATGCGCTCTGAGTGACATCATGAAGAAGGAGATTAAAAAGAGTGATGGTGGCGATGCTGGAGGATATAAAGTCGGTCAGGTGTCCGGCAGCCTCTTCCCAGAAAAACACAAATCCTCAGCTCTGTCTTCATTATTCGCCTCCACTTCATCTGCAAATACTTTAGTGTTCCTTCCTCCACCAAAAATTGAGCCTAAAGTCACGCCTGCAGTGTCTGATAATGCAGTAGTCAAGAGCAAAGATCAGGTTcagaaacagaagaaaaaaccaAAGACTCTTTCAGCTGCTGAGAAGAAACTCCAGGACAGGGAAAGCGCTCTACAGAACGCTGATGAAGAAGGACAAGCGAGTGCAAAGAAAGTCAAACGTAAACGTGCAGACGGAGGAGAAGACGAAGAAGAGCGACCCACCAAACACAAGAAAACCGTCAAGTTCAATGCGGAGGAACGGCTCAAAATGAAACGAACGGTGTTTGTGGGAAATCTCCCGTCCAGCTGCAAGAAGAAGgATCTTCTGTCCGTGTTCAAGAAGTCTGGAGTCATCGAATCGGTTCGCTTTCGTTCAGTGATTCGGGAAGATCCAACTATGTCCCGCAAAGTGGCTGCCATCCAGAGAAAAGTACATCCcaagaaacaaaatattaatgCTTACATCGTCTTCAAAGAGGAAGAATCAGCCACTGATGCTCTCAAATGgaatggCCATGAGATTCAGGCAGGTTTCTACATACGAGTGGACCGAGTTTCTCAGCACAGCAAACATGATCATAAACGCTCCATATTTGTGGGGAATTTACCGTACGATATAAGTGAGCTTCCGCTGCAGAATCACTTCCAGGAGTGTGGAAACATCGAGGCCGTGCGTTTGGTGCGAGACAGGGATTCTGGCATGGGGAAAGGCTTCGGCTATGTCCTTT
>TCONS_00007220
GCATGCGCGGGGCAGCGAAATAAACGTGTTTATGTGTGAAACTTCAGCACCTCGCTGTAACTTTAATTACGCTTAACTTACAGAAATATCGTCCAGATCATTCTACATAGACATGCGCTCTGAGTGACATCATGAAGAAGGAGATTAAAAAGAGTGATGGTGGCGATGCTGGAGGATATAAAGTCGGTCAGGTGTCCGGCAGCCTCTTCCCAGAAAAACACAAATCCTCAGCTCTGTCTTCATTATTCGCCTCCACTTCATCTGCAAATACTTTAGTGTTCCTTCCTCCACCAAAAATTGAGCCTAAAGTCACGCCTGCAGTGTCTGATAATGCAGTAGTCAAGAGCAAAGATCAGGTTcagaaacagaagaaaaaaccaAAGACTCTTTCAGCTGCTGAGAAGAAACTCCAGGACAGGGAAAGCGCTCTACAGAACGCTGATGAAGAAGGACAAGCGAGTGCAAAGAAAGTCAAACGTAAACGTGCAGACGGAGGAGAAGACGAAGAAGAGCGACCCACCAAACACAAGAAAACCGTCAAGTTCAATGCGGAGGAACGGCTCAAAATGAAACGAACGGTGTTTGTGGGAAATCTCCCGTCCAGCTGCAAGAAGAAGgATCTTCTGTCCGTGTTCAAGAAGTCTGGAGTCATCGAATCGGTTCGCTTTCGTTCAGTGATTCGGGAAGATCCAACTATGTCCCGCAAAGTGGCTGCCATCCAGAGAAAAGTACATCCcaagaaacaaaatattaatgCTTACATCGTCTTCAAAGAGGAAGAATCAGCCACTGATGCTCTCAAATGgaatggCCATGAGATTCAGGCAGGTTTCTACATACGAGTGGACCGAGTTTCTCAGCACAGCAAACATGATCATAAACGCTCCATATTTGTGGGGAATTTACCGTACGATATAAGTGAGCTTCCGCTGCAGAATCACTTCCAGGAGTGTGGAAACATCGAGGCCGTGCGTTTGGTGCGAGACAGGGATTCTGGCATGGGGAAAGGCTTCGGCTATGTCCTTTTTGAGAGCCCAGACTCAGTGATGTTAGCATTGAAACTCAACGGCTCGACATTACAGCAGCGAAAGATCCGGGTGAAACGCTCCGTGAAGaaggagaaagaaaagaaaactccACCAGGACGAAAAGCAGAAGGACAGCGAACGGGAGGAGGACTCAAAGGGCCGAAGCAGGAGTTCAGAAATAACACGGGCAGAAAAAACTTCACCAAGAACCCCAGAAATAAACCAACACAAGCGTCCTCGTTTAAAGGAGAAATGGCGGATCCCACTGCCAAAAGAGGAAAACCGCAGAAGAAGAAGTTCAAGCACAAGAAGAAGAAACACAGCGGTCATGTTTAGGTTTATCATGTATACGTGTGTTTTAATTGTGCTGAttaaaaatactgactgattaaC

Function

symbol description
rbm34 Predicted to enable RNA binding activity. Orthologous to human RBM34 (RNA binding motif protein 34).

GO:

id name namespace
GO:0005575 cellular_component cellular_component
GO:0003676 nucleic acid binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040718-77 Predicted to enable RNA binding activity. Orthologous to human RBM34 (RNA binding motif protein 34).

Ensembl:

ensembl_id ENSDARG00000101877

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00007216 False 1513 mRNA 0.47 12 44617021 44635060
TCONS_00007217 False 4669 mRNA 0.40 11 44622019 44637842
TCONS_00007218 False 911 mRNA 0.45 9 44622472 44632802
TCONS_00007219 False 1033 mRNA 0.46 10 44622476 44633301
TCONS_00007220 True 1421 mRNA 0.46 11 44622483 44635061

Neighbor

gene id symbol gene type direction distance location
XLOC_003741 nid1b coding upstream 13232 44548209 ~ 44603789 (+)
XLOC_003740 NA coding upstream 74023 44539504 ~ 44542998 (+)
XLOC_003739 ero1b coding upstream 92089 44502410 ~ 44524932 (+)
XLOC_003738 NA coding upstream 166658 44447688 ~ 44450363 (+)
XLOC_003737 NA coding upstream 217651 44394335 ~ 44399370 (+)
XLOC_003743 NA coding downstream 38664 44676506 ~ 44752657 (+)
XLOC_003744 irf2bp2b coding downstream 85177 44723019 ~ 44726288 (+)
XLOC_003745 NA coding downstream 154661 44792503 ~ 44803305 (+)
XLOC_003746 strn coding downstream 166843 44804685 ~ 44855209 (+)
XLOC_003747 FO744859.1 coding downstream 213632 44851474 ~ 44851593 (+)
XLOC_003369 CR854846.2 misc upstream 28493939 16122786 ~ 16123082 (+)
XLOC_003318 CR450764.6 misc upstream 31905025 12711700 ~ 12711996 (+)
XLOC_003317 CR450764.16 misc upstream 31922758 12693967 ~ 12694263 (+)
XLOC_003316 CR450764.11 misc upstream 31931422 12685304 ~ 12685599 (+)
XLOC_003315 CR450764.18 misc upstream 31936993 12679732 ~ 12680028 (+)
XLOC_003736 NA non-coding upstream 225480 44384924 ~ 44391541 (+)
XLOC_003735 NA non-coding upstream 241839 44369127 ~ 44375182 (+)
XLOC_003748 NA non-coding downstream 270127 44907969 ~ 44911219 (+)
XLOC_003752 NA non-coding downstream 498173 45136015 ~ 45143840 (+)

Expression


Co-expression Network