CI01000308_00695140_00699646 (SCN4B, SCN4BA)


Basic Information

Item Value
gene id CI01000308_00695140_00699646
gene name SCN4B, SCN4BA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000308
NCBI id null
chromosome length 1982671
location 695140 ~ 699901 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000308_00695140_00699646.mRNA
GAGTGTGGTACGCTCAGGCTTTGGAGGTGAATACAGGGAAGGTCCATTTCGTAGAAGTGATGAATGGAAGTTCAGTGCTCTTACCCTGCACTTACAGCAGCTGCATCGGCATTAAAAACCTTTACTTCAACTGGCAGTTCAAGGACAATGGGACAATGGTTAAGCTTTGTGAGGCCACTATCCCAGCAGAAGGAGTAGAACCTAACGTGAAAATCTATCATGAGCGGGTGGAGTTTGTCGGCTCCAGCAAGCACAGTAACATCTCCATCTTACTGCACAACGTCACCTTCGAGGACCAGGGAGAGTACATCTGCTTCGCCCGCAACCCTAAGGAGAAGGAACGCAACCATAGTGCAATTTTCACTCTTTATGTGGTGGACGAATTGAAAGTGGTGGACAACACATTGACCTTAATCATTGTGTCCGTGCTCGGAGGGGTCATAGGCCTGATCATTCTCATAATGGTGGTGAAAGCTGTAGTCATTGCCGTTCTAAACAAGGTCCAGGAGAAGAAGTAAGTCAGTTTTATCAAAATCTTGTCAAAAACTCTACAGTAATGAAACTTCCATTACTTTTTATGGTTTTTCAAAACCTAATCAATGAATTTTAACCTGCCCTTGTTTTCTACTTGGTTGTGTTACATACATCCCTACATATATCTATACTTCAAGTTCATTTAATTAAGTGTACTCAAATAAAGTTGAAGTATACTGCCCGGCCCAAAAAAAAAAAAAAAAAATAAAGTCACTGTTTGGATTTAAATAGGCAAATAA

Function

symbol description
scn4ba Predicted to enable sodium channel regulator activity and transmembrane transporter binding activity. Predicted to be involved in cardiac muscle cell action potential involved in contraction; regulation of sodium ion transmembrane transporter activity; and regulation of ventricular cardiac muscle cell membrane repolarization. Predicted to act upstream of or within ion transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be part of voltage-gated sodium channel complex. Predicted to be active in plasma membrane. Is expressed in atrium; brain; cardiac ventricle; eye; and musculature system. Human ortholog(s) of this gene implicated in long QT syndrome 10. Orthologous to human SCN4B (sodium voltage-gated channel beta subunit 4).
scn4b Enables sodium channel regulator activity; transmembrane transporter binding activity; and voltage-gated sodium channel activity involved in cardiac muscle cell action potential. Involved in several processes, including cardiac muscle cell action potential; regulation of heart rate by cardiac conduction; and regulation of ion transport. Is intrinsic component of plasma membrane. Part of voltage-gated sodium channel complex. Implicated in long QT syndrome 10.

GO:

id name namespace
GO:0016020 membrane cellular_component

KEGG:

id description
K04848 SCN4B; voltage-gated sodium channel type IV beta

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000308_00695140_00699646.mRNA True 773 mRNA 0.41 3 695140 699901

Neighbor

gene id symbol gene type direction distance location
CI01000308_00657092_00659557 SCN2B coding upstream 34652 656991 ~ 660488 (+)
CI01000308_00640975_00648455 NA coding upstream 45999 640908 ~ 649141 (+)
CI01000308_00435833_00465809 NA coding upstream 229094 435553 ~ 466046 (+)
CI01000308_00363344_00367355 NA coding upstream 327522 363004 ~ 367618 (+)
CI01000308_00079714_00086440 NA coding upstream 607723 79608 ~ 87417 (+)
CI01000308_00770560_00784179 NA coding downstream 70371 770272 ~ 785796 (+)
CI01000308_00836074_00942387 DSCAML1 coding downstream 136173 836074 ~ 942387 (+)
CI01000308_00983925_00991307 NA coding downstream 284024 983925 ~ 991389 (+)
CI01000308_01003736_01006059 NA coding downstream 303835 1003736 ~ 1007117 (+)
CI01000308_01132580_01134190 FKRP coding downstream 432124 1132025 ~ 1134414 (+)
G437831 NA non-coding upstream 160609 534330 ~ 534531 (+)
G437827 NA non-coding upstream 166683 528194 ~ 528457 (+)
G437814 NA non-coding upstream 200385 494497 ~ 494755 (+)
G437788 NA non-coding upstream 210749 483599 ~ 484391 (+)
G437509 NA non-coding upstream 431267 177546 ~ 263873 (+)
G437906 NA non-coding downstream 38606 738507 ~ 741264 (+)
G437905 NA non-coding downstream 53796 753697 ~ 755961 (+)
G437917 NA non-coding downstream 86063 785964 ~ 821603 (+)
G437929 NA non-coding downstream 96561 796462 ~ 796886 (+)
G437938 NA non-coding downstream 122488 822389 ~ 822661 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_009058 scn4ba coding NC_007126.7 CM002899.2 12466852 ~ 12500938 (-)