CI01000325_08468869_08484123 (GRM1, GRM1A)


Basic Information

Item Value
gene id CI01000325_08468869_08484123
gene name GRM1, GRM1A
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000325
NCBI id null
chromosome length 10587162
location 8468741 ~ 8484485 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000325_08468869_08484123.mRNA
AATGGACTGATTTAGGGTGTTTAGGAGGAAAAAAAGGACATGCACACATGCAGAAAGGACATGACAAAGGCTCGTGATATGTGTATGTGAATGTGAGAAGGGGAGAGAGAGTAATGGAGGCAGATGAAAGCTGGTGTGGGGTGAGAGAGAGCAGGCGTGATGGGGGCTCCCAGCAGCAATGCTGCCTGTGAAACACAGAGCCAGGCTGCTGCTAACTGGAGCGCCATGAATTAGTAAAGGCTTCTGGATGAGTTCTAATGGCCCTCAGCCTAAGCCTGCACTGTCTTACTCAGTCCTCTAGAGAGGATCGAGCAACAGTCAACCAGAGCACACATGCACAATATACTGGATTTGAATGAGTAATGAGGGAACAGAGGATAGGAGGAGAGAGCAGAGGAGGACAAAAAAGGAGAGCATCTAGTCACTATTGGCGTCAGTCGGAAAAACATTGTCTGCATCCAAATGCCGTTTTGTCATCATCTGTAAGTGATGGCTGGGCAGATCGTGATGAGGTGGTAGAAGGATATGAGCAGGAAGCAGATGGTGGGATCACAATGAAGTTGCAAACGGAAGAAGTTCAGTCATTTAATGAGTACTTTCTGAAGCTGCGTTTGGACACCAACACAAGGAACCCGTGGTTTGCTGAGTTTTGGCAGTACCGCTTCCAATGCCGCATTCCTGGTCATCCTCAGGAGAACCATAACTACCAGAAAATCTGCACAGGAAATGAGAGCTTGAAAGACAACTATGTCCAGGACAGCAAGATGGGCTTTGTGATCAATGCGATTTATGCAATGGCTCATGGCCTTCATGATATGCACAAAGAGATGTGCCCAGACCACGTTGGCCTGTGTGAGGCGATGGATCCCATTGATGGCAGTAAGCTGCTGGACTATATACTCAAGACCTCCTTTGCCGGTGTGTCTGGGGAGGACATCTACTTTGATGTAAACGGAGACTCACCTGGGAGGTATGACATTATGAATCTACAGTATGTGGAGGAGATGGGCCGCTTTGATTACATTAATGTGGGGTCGTGGCATGAAGGTATCCTAAGCATCAGTGATTACAAACTCATGACGAACCGCACTGAGATGGTCCGATCTGTCTGCAGCGAACCGTGCTCCAAGGGACAGATCAAGGTGATCCGTAAAGGTGAAGTGAGTTGCTGCTGGATCTGCACTACATGTAAAGATAATGAATACGTTCAGGATGAGTTCACTTGCAGAGCTTGTGACCTGGGCTGGTGGCCTGATGACGAACTCTCAGAATGCCAGCCTCTCCCGCTCAAATACCTAGAGTGGAGCAGTGTGGAGTCCATCATCGCAGTGGTGTTCTCCTGCCTCGGCATCCTGGTAACGCTGTTCGTCACCTTCATCTTCATCCAGTACCGTGACACGCCGGTGGTGAAGTCCTCCAGCCGTGAGCTCTGCTATATCATCCTGGCGGGTATCTTTCTTGGCTACATCTGCCCCTTCACACTCATCGCACGTCCTACTGTGATCTCCTGCTACCTGCAGCGCCTCCTAGTGGGCTTGTCGTCCGCCATGTGCTACTCTGCTCTTGTAACCAAGACCAACCGCATTGCACGCATCCTGGCCGGCAGCAAGAAGAAAATCTGCACGCGCAAGCCCCGATTCATGAGTGCCTGGGCCCAGGTGGTTATCGCCTCCATCCTGATTAGTCTCCAGCTGGCTGTGGAGATCACGCTGATCGTGCTGGAACCCCCCGAACCGGTGAAAAGCTACCCTAGCATCAGGGAGGTGTTCCTCATCTGTAACACAAGTAACGTGGGCGTAGTGGCTCCACTGGGTTACAATGGCCTGCTCATCATGAGCTGCACTTACTATGCCTTCAAGACCCGCAACGTGCCGGCTAACTTTAATGAAGCCAAGTACATTGCGTTCACCATGTACACCACCTGCATTATCTGGCTGGCTTTTGTTCCCATCTACTTTGGCTCCAACTACAAGATCATCACCACCTCCTTCTCCGTCAGTCTCAGTGTTACTGTAGCACTGGGCTGTATGTTCACTCCCAAGATGTACATCATCATCGCCAAGCCTGAGCGCAACGTACGCAGCGCCTTCACGACCTCAGACGTGGTTCGTATGCATGTGGGCGATGGGAAGCCAGCTCCTTGCCAGAGCAACAGCATCCTCAACATGTTTCGCAGGAAGAAGAACAACAACAATGCAACCGCCAGCACCAATCCTAATGGAAAGTCTGTGTCATGGTCTGAATCAGGTGCCAGACCCCAGGGGAGGGGGTCGAGTGTGTTCCACAGACTGTCTGTGCATGTGAGGAGGCAAGCGGTCGGCCAGAGTCAGACGGCGGTCATCCGACCCCTAACTAATGCCTCACAGCCCCCCCAGTCTGAATATGATGCTGGTCTCAACACAGCCCCCAACGGATCTCACCCCGAAGACAAGGAACTCTACAACCTCAGCGAGGGGCACGATGGGGGTCCCCAACATCCCACAACCCAGGAGGGAATGGTACCACCTTCCTATTCCCCCCCTAATTTAATAGACCACAACACTGATTGCCCTCAAGGGGGGCCGGTGGACACTCTGAGCTCTACAGTTCCTGATTTTGACCAATTTGTAATCGGCACGGGCAACAAGTCGAGCCCCGTCGCCTATAAATTGTCCACCAATCAGCTGCCTCTTCCCTTGCAGGGGGAGGCGTTCCCTGTGGAAGGTTCTGAAATGGAAGCTCTCGACCTCATTCAGGGGTTTCTGTGTGAGAGTGCCACACAAGAAGAGGAGGAAGAGGAAGGTGTGGAGGAAGAGTTGGCACAGAGTAAGCTGACTCTGCTCACTCCACCTTCCCCCTTCAGGGATTCGCTTCGATCAGGGGGGTCCATTCCCGGATCCCCCGGCTCTGATAACAACCCTCCCTTTTCCCAAAATATGAACTACAACCCAAAACAGAGCTCTTTTACACTGTAAAAGCACACGCTCAGGACGGCGCTTTTTATCAGTCGATCACTGCGGGATATCATTTGCTTGCTTACTCGGCTATCTTCGCAAGTCTCTGTCAAAATGTTTCGGAAAAGCAAGAAGGACCATAAAATAAA

Function

symbol description
grm1a Predicted to enable G protein-coupled receptor activity involved in regulation of postsynaptic membrane potential; adenylate cyclase inhibiting G protein-coupled glutamate receptor activity; and neurotransmitter receptor activity involved in regulation of postsynaptic cytosolic calcium ion concentration. Predicted to be involved in G protein-coupled glutamate receptor signaling pathway and regulation of glutamatergic synaptic transmission. Predicted to act upstream of or within G protein-coupled receptor signaling pathway. Predicted to be located in plasma membrane. Predicted to be integral component of membrane. Predicted to be active in postsynaptic density membrane. Predicted to be integral component of plasma membrane. Is expressed in brain and retinal neural layer. Human ortholog(s) of this gene implicated in autosomal recessive spinocerebellar ataxia 13 and spinocerebellar ataxia 44. Orthologous to human GRM1 (glutamate metabotropic receptor 1).
grm1 Enables glutamate receptor activity. Involved in G protein-coupled glutamate receptor signaling pathway and positive regulation of cytosolic calcium ion concentration involved in phospholipase C-activating G protein-coupled signaling pathway. Is integral component of plasma membrane. Part of G protein-coupled receptor homodimeric complex. Implicated in autosomal recessive spinocerebellar ataxia 13 and spinocerebellar ataxia 44.

GO:

id name namespace
GO:0004930 G protein-coupled receptor activity molecular_function

KEGG:

id description
K04603 GRM1; metabotropic glutamate receptor 1

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000325_08468869_08484123.mRNA True 3082 mRNA 0.51 7 8468741 8484485

Neighbor

gene id symbol gene type direction distance location
CI01000325_08451080_08466811 RAB32, RAB32A coding downstream 1201 8449373 ~ 8467540 (-)
CI01000325_08399592_08444962 ADGB coding downstream 23779 8399562 ~ 8444962 (-)
CI01000325_08366684_08385221 STXBP5 coding downstream 83425 8366374 ~ 8385316 (-)
CI01000325_08294503_08351697 STXBP5A, STXBP5 coding downstream 116204 8294359 ~ 8352537 (-)
CI01000325_08274921_08276062 SAMD5 coding downstream 192631 8274375 ~ 8276110 (-)
CI01000325_08488183_08498054 NA coding upstream 3532 8488017 ~ 8499363 (-)
CI01000325_08517828_08523052 NA coding upstream 33129 8517614 ~ 8523456 (-)
CI01000325_08571807_08594165 NA coding upstream 86968 8568722 ~ 8594736 (-)
CI01000325_08609784_08639480 FOXO3, FOXO3B coding upstream 125139 8609624 ~ 8642039 (-)
CI01000325_08645444_08676032 NA coding upstream 160246 8644731 ~ 8676032 (-)
G467736 NA non-coding downstream 69990 8398524 ~ 8398751 (-)
G467730 NA non-coding downstream 81508 8386466 ~ 8387233 (-)
G467594 NA non-coding downstream 535429 7931169 ~ 7933312 (-)
G467703 NA non-coding downstream 571761 7893797 ~ 7896980 (-)
G467696 NA non-coding downstream 586192 7865070 ~ 7882549 (-)
G467784 NA non-coding upstream 39507 8523992 ~ 8524875 (-)
G467792 NA non-coding upstream 48789 8533274 ~ 8534040 (-)
G467793 NA non-coding upstream 49624 8534109 ~ 8534326 (-)
G467796 NA non-coding upstream 57011 8541496 ~ 8541770 (-)
G467797 NA non-coding upstream 57393 8541878 ~ 8542267 (-)
G467578 NA other downstream 513549 7946345 ~ 7955192 (-)
G467570 NA other downstream 851911 7615486 ~ 7616830 (-)
G465716 NA other downstream 2840573 5626213 ~ 5628168 (-)
CI01000325_05531464_05543064 ITPK1A other downstream 2935899 5528844 ~ 5543064 (-)
CI01000325_05430077_05434997 NA other downstream 3033688 5430010 ~ 5435253 (-)
G467741 NA other upstream 194687 8679172 ~ 8697583 (-)
CI01000325_09286047_09286556 ERH.L, ERH, ERH.S other upstream 801047 9285532 ~ 9286556 (-)
G468702 NA other upstream 1682614 10023665 ~ 10193979 (-)
G468823 NA other upstream 1831645 10316130 ~ 10316685 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_018187 grm1a coding NC_007131.7 CM002904.2 32047385 ~ 32112818 (-)