CI01000339_00104544_00105929


Basic Information

Item Value
gene id CI01000339_00104544_00105929
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000339
NCBI id null
chromosome length 8057057
location 103691 ~ 106266 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000339_00104544_00105929.mRNA
AAATATAAACCCCACTGCCATGGCACGAGGCCAAGACAAGTGTTGGTAGCATGTCATCACCAAAGAGTAAACATCAAAGATATGCAGTGAAGCCTTAATGAGCCAGAAACTTGAGCCACCAAAAGAACCATAGCTCAAGGTCGATTTCTCCCCTCTTTTGTCCACGAGGTGCTAAATAATTCTGGAAATACACACCGCTCTCACTTCTTTGGGAGAGAGTGACATGTGCTCTCATCACTCCTGAATGATTCGATTTGGACTTGAACATGATTTTGGCCAGCCATGATTAACATAAATATAGTTTACTTGTGGTTCACCTAGCTTTGTTCTTCAAACGATCAAATAACATATTACTTGCACAGAATTATTATTAACAATAAAACTACCCTACTAACCCAGTGCTGCTGTGCCATGGGAAAAGCAACTGGAGTGCCCAGTTAATTTACATTGTGAAGAAGATACAAAACAGGTAACTCAAAACCTTAAGGCTGCCATTAAATTTTGATGGGCCGCTACCCAGAATTTTCAGGGTGAGCACGGACCATTCTCTAGAAGGGACAAGAGGAAAGAGCGAAGGATGTGAAGCGGACAAAGTGAAAGCGAGGGGTCAGCTGAAACAGGGCAATAATGGTGAGTACCACATCTCTATGTCTAAATAACACATTTGATAAGACGTTTGGAGTCAAGCTCAAGACGCGCATGAAAGGAAATACAACCTGGAGGAGCCGCAGAGTCCATCATAGTAATTAAGTTTGTTCAACAGATTCATTTGCAGTAAAAGAAAAGCAGTTACTAACTTCTCCTTTCTCTTTCCCTTATCCATCCCTCTTAATCTTCTTCCCTCAAGTGAGCCATGTGTCGTAGTCTTCTCTACTGTCTCTTGTTGTATCTCTGTTCATCACTCCTTGCCGGCCTGGTTGTGTCACCCTGTCCCAACGGCTGCTGCTGTCCCCATTCTGGTGCTCTGGTTCTGTGCGAGTCTCTTGGTCTACATACTCTGCCTCGCTCTGTCCCCCTAAGCACCGCCGTCCTCTCCGTAGCCCGGAATCGGCTCTGCAATGTGGATAATGTGTTTCAACCGTACTCGGGCCTACAGGAACTAAGCCTCAGCCACAACCAACTGGTTCGTTTCCCTCGTGGGCTGCCGTCAAGTCTAGAGACCCTTCAGCTTCAAGAGAACCAGATCACCTACATCACTGCCGGATCTCTAAGGCAGCTTGGGAACCTCACACGCCTGGACCTAGAGGATAACCGGATACGAGCGATTCAGCCGGGGGCGCTGCTAGGTTTGACCAAACTGAGGAGGTTGACCCTTAAGGGGAACAGATTGTCTCATCTGCCACCTAACTTACCTTCTTCGCTGACACACCTCGACGTGTCGGCAAACTGCATATCTGCCCTAGATCCATCCTCGTTGGGTGCATTGGTGAACTTACAAGTGTTAAAGATTAACAGTAACTGTTTACGCTCTATACCCGAGCAGGCTTTTGATGGATTGTCCCGTCTCCAGTCGGTGGAACTAGCCAATAACCTGTGGGTTTGTGAGTGTGACATCATGTATCTTTATAGGTGGCTTCTGATGGACAGGTTACGGATGGCATCGGATCTAGTATGTACAACTCCTTTGCACCTTGCACAGAAGTTGCTATTAACTCTGTCGGTCATGGCCATCTGTCCAAAACTTTTTAAGCCAGTTGAGAGAATGTCATCTGTAAATACAAGTGCAGAAACTGGAAAAGTGGTTGAAAGTCATATAGAACAGACTACAAGTACATCGATGTTGGTTAGATCTGATGTTGCATGCAATGCAAGTTCATTTAGATGTCAAAAATCTTTGCCAGAGAGCACAATATCAAGGTCCTTCTTTGGGTCAGACCAGCCCACTTTAGAGAGACTGAGCTATGAAAACTGTCTCTCACTAAATTTGACATCTTTTATACCCCCGTCCACCCAAGTACCCAACAGTCCAGCCACAGATGAGGAACCTGGTTGTGTGGAGAATTCAACAGGAGCATCAGCAACTACTGGTTCAATGACCACAACTAGAGACATCGAATTCACTCCTCGGACAATACTACAGTCCAGTGACCCAGTGCTCATTGCGGTCCTGGCTGTTCTTTGTGTGCTTACAGGACTTCTGATGCTCACAGTGCTTTTGATACTGAAGAACATCCTGCTCAGAAACTTGAGAGTTGCACCGTTTCCACAGGTTCAAGAAGACATTAGCACACATTCATAATCTGTATTACAGACAACTTTTTAGTGCAGAAAAATATGTAGGGAATAATACAAAACAATGGTTGATGCAATATTAACATCTAGAGCTTTATTAAGTTTTTACAAGAAATAATACAGCATCAAAGCCCAGGTATCTATTGGTTTTTTTGGTGTCACTTTTGCTTACAAATCACTGCCAAAACTATAATGACCCTCCTGCAAATCTTAACAAATGTTTTTTTTTCTTTTTAAACCCATACTTTACTTTTTATGGTGTAGTAGAATACATTTAAAAGCATTTTAGTATTATACATTTAATATTAAGGACATTTAATGTCCGAGTATGAGATCTTCAAGAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000339_00104544_00105929.mRNA True 2576 mRNA 0.43 1 103691 106266

Neighbor

gene id symbol gene type direction distance location
CI01000339_00095291_00096742 NA coding upstream 5866 95291 ~ 97825 (+)
CI01000339_00069245_00092819 CORO1C, CORO1CA coding upstream 10425 69245 ~ 93266 (+)
CI01000339_00040401_00044825 NA coding upstream 58526 40156 ~ 45165 (+)
CI01000339_00014867_00022451 SSH1A, SSH1 coding upstream 81033 13126 ~ 22658 (+)
CI01000339_00112995_00113192 NA coding downstream 6345 112611 ~ 113192 (+)
CI01000339_00117608_00135474 SART3 coding downstream 11342 117608 ~ 135672 (+)
CI01000339_00188554_00189543 NA coding downstream 82131 188397 ~ 190178 (+)
CI01000339_00210534_00211598 NA coding downstream 103793 210059 ~ 211601 (+)
CI01000339_00214390_00215412 NA coding downstream 107740 214006 ~ 215884 (+)
G480644 NA non-coding upstream 66096 36370 ~ 37595 (+)
G480657 NA non-coding downstream 53726 159992 ~ 160961 (+)
G480658 NA non-coding downstream 55539 161805 ~ 162032 (+)
G480662 NA non-coding downstream 70281 176547 ~ 176901 (+)
G480699 NA non-coding downstream 224042 330308 ~ 330724 (+)
G480700 NA non-coding downstream 228051 334317 ~ 334711 (+)
G480663 NA other downstream 71402 177668 ~ 177983 (+)
G480761 NA other downstream 528148 634414 ~ 643423 (+)
G481321 NA other downstream 1183055 1289321 ~ 1290733 (+)
CI01000339_01571624_01576903 NA other downstream 1468268 1571624 ~ 1577706 (+)
CI01000339_02196706_02198050 GABARAPL1, GABARAP.L, GABARAP, GABARAPA, GABARAPB, BRAFLDRAFT_122660, GBRAP other downstream 2090334 2196307 ~ 2198809 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_029990 si:ch211-191d15.2 coding NC_007116.7 CM002889.2 20441653 ~ 20442314 (+)