XLOC_000142 (cnga3b)


Basic Information

Item Value
gene id XLOC_000142
gene name cnga3b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 10771457 ~ 10776547 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00000255
TGTTGTCTTCACAGCTTCAACAACAATGCGAATCATTGGCCTCTTGCAGCGCTGAATATGAACAACTGCAACAACACAGATGAGGAGATAAAGAAAGATGACAAGAAGGAAGAACCAAAAAAGGATGAAAAGAAGGAAGAGAAAAAAGATGAAAAGAAAGATGAGAAGAAAGACGAGAAGAAAGATGAAAAGAAAGATGAGAAGAAAGATGAAAAGAAAGATGAGAAGAAAGATGAGAAAAAGGATGATAAAAAAGATGATAAAAAGAAGGAAGAGGAGAAGCCtaaacatGTGTGGATAATGGATCCAGCAACAGATTTATACTATCACTGGCTGACTATCGTAGCAATACCTGTGTTCTACAACCTAATGTTGCTTGTTACCAGagcCTGTTTTAACGAGCTGCAGGATGATTACACAATCCTATGGATGGTTCTGGACTATACATCAGATGTCATCTACTACCTTGACACATTTGTGAGATCAAGGACAGGTTTCTTGGAGCAAGGCTTACTAGTGAGAGAATCCAAGAAGCTGTGGGAGCACTACAAAAAGTCACCGCAATTCAAATTCGACATATTCTCCATGATACCAACAGACATACTAATGCTGAAAGTGGGTTACAACAATCCAGAGCTGAGATTCAACCGGCTTTTCAAAATGGCTCGTCTGTTTGAGTACTTTGACCGAACTGAAACCAGAACCAACTTCCCAAACATCTTTCGAATCAGCAATCTCGTCCTGTACATCCTTATCATCATCCACTGGAACGGCTGTATCTTTTTCGCCATTTCAAAAACTCTTGGCTTTGGCTCGGACTCTTGGGTGTATCCCAACATCAGTGACCCCGAGTTTGGTCGTCTTGGCAGAAAGTACATCTATTGCTTGTACTGGTCCACTCTCACGCTCACCACCATTGGAGAAACACCACCACCTGTCAGAGACATTGAGTACTTTTTTGTCGTTTCTGATTTCCTCATTGGCGTGTTGATCTTTGCCACCATCGTTGGTAACGTTGGTGCTATGATTTCCAACATGAATGCATCCCGCGCAGAGTTCCAGGCCAAGATTGACTCAATCAAGCAGTACATGCAGTTCAGAAAGGTCAGCAAAGATCTGGAGGCGCGTGTCGTGAAGTGGTTTGACTACCTTTGGACCGAACAGAAGACTTGCGATGAAAAGGAGGTGCTCAAGTACCTCCCAGACAAACTCAAGGCAGAGATCGCCATCAACGTGCATCTGGAGACTCTTCGGAAGGTGCGTATCTTTCAGGATTGCGAGGCGGGTCTTCTTGTTGAGCTTGTCCTTAAACTTCAACCGCAGGTTTTCAGCCCTGGCGACTACATCTGCAAGAAGGGAGACATCGGGAGAGAAATGTACATTATAAAAGAAGGCAAACTAGCTGTGGTGGCCGATGATGGAGTCACGCAGTTTGTGGTCCTGAGCGATGGCGCTTACTTTGGTGAGATTAGCATCCTCGGAATCAAAGGAAGTAAAGCTGGAAATCGCAGGACTGCAAACATACGTAGTGTGGGATACTCTGATCTTTTTGCGCTCTCCAAAGATGACCTAATGGATGCTTTATCGGAGTACCCAGAAGCCAAGAAGGCACTAGAGGAGAAAGGTAGGGCTATTTTGATGAAAGACAATCTTATCGATGAGGCTGCTGCCAATGCTGGCGCAGACGCCAAAGACCTAGAAGAAAAGGTGAATTTGCTTGGGACGAACCTAGATGTGATGCAGACTAAATTTGCTCGTCTTATGGCAGATTGGACTGCCAGCCAGAGCAGGATCAAACAGAGGCTCACCAACATGGAGGCCCGCGTGAAGACTCTTAGGGAGGAGGATTTGGACGAGGTCGTAGAGGATAAGAAGGACAAATAA
>TCONS_00000256
CAACAACAATGCGAATCATTGGCCTCTTGCAGCGCTGAATATGAACAACTGCAACAACACAGATGAcaaaaAAGACGACAGGGAGATAAAGAAAGATGACAAGAAGGAAGAACCAAAAAAGGATGAAAAGAAGGAAGAGAAAAAAGATGAAAAGAAAGATGAGAAGAAAGACGAGAAGAAAGATGAAAAGAAAGATGAGAAGAAAGATGAAAAGAAAGATGAGAAGAAAGATGAGAAAAAGGATGATAAAAAAGATGATAAAAAGAAGGAAGAGGAGAAGCCtaaacatGTGTGGATAATGGATCCAGCAACAGATTTATACTATCACTGGCTGACTATCGTAGCAATACCTGTGTTCTACAACCTAATGTTGCTTGTTACCAGagcCTGTTTTAACGAGCTGCAGGATGATTACACAATCCTATGGATGGTTCTGGACTATACATCAGATGTCATCTACTACCTTGACACATTTGTGAGATCAAGGACAGGTTTCTTGGAGCAAGGCTTACTAGTGAGAGAATCCAAGAAGCTGTGGGAGCACTACAAAAAGTCACCGCAATTCAAATTCGACATATTCTCCATGATACCAACAGACATACTAATGCTGAAAGTGGGTTACAACAATCCAGAGCTGAGATTCAACCGGCTTTTCAAAATGGCTCGTCTGTTTGAGTACTTTGACCGAACTGAAACCAGAACCAACTTCCCAAACATCTTTCGAATCAGCAATCTCGTCCTGTACATCCTTATCATCATCCACTGGAACGGCTGTATCTTTTTCGCCATTTCAAAAACTCTTGGCTTTGGCTCGGACTCTTGGGTGTATCCCAACATCAGTGACCCCGAGTTTGGTCGTCTTGGCAGAAAGTACATCTATTGCTTGTACTGGTCCACTCTCACGCTCACCACCATTGGAGAAACACCACCACCTGTCAGAGACATTGAGTACTTTTTTGTCGTTTCTGATTTCCTCATTGGCGTGTTGATCTTTGCCACCATCGTTGGTAACGTTGGTGCTATGATTTCCAACATGAATGCATCCCGCGCAGAGTTCCAGGCCAAGATTGACTCAATCAAGCAGTACATGCAGTTCAGAAAGGTCAGCAAAGATCTGGAGGCGCGTGTCGTGAAGTGGTTTGACTACCTTTGGACCGAACAGAAGACTTGCGATGAAAAGGAGGTGCTCAAGTACCTCCCAGACAAACTCAAGGCAGAGATCGCCATCAACGTGCATCTGGAGACTCTTCGGAAGGTGCGTATCTTTCAGGATTGCGAGGCGGGTCTTCTTGTTGAGCTTGTCCTTAAACTTCAACCGCAGGTTTTCAGCCCTGGCGACTACATCTGCAAGAAGGGAGACATCGGGAGAGAAATGTACATTATAAAAGAAGGCAAACTAGCTGTGGTGGCCGATGATGGAGTCACGCAGTTTGTGGTCCTGAGCGATGGCGCTTACTTTGGTGAGATTAGCATCCTCGGAATCAAAGGAAGTAAAGCTGGAAATCGCAGGACTGCAAACATACGTAGTGTGGGATACTCTGATCTTTTTGCGCTCTCCAAAGATGACCTAATGGATGCTTTATCGGAGTACCCAGAAGCCAAGAAGGCACTAGAGGAGAAAGGTAGGGCTATTTTGATGAAAGACAATCTTATCGATGAGGCTGCTGCCAATGCTGGCGCAGACGCCAAAGACCTAGAAGAAAAGGTGAATTTGCTTGGGACGAACCTAGATGTGATGCAGACTAAATTTGCTCGTCTTATGGCAGATTGGACTGCCAGCCAGAGCAGGATCAAACAGAGGCTCACCAACATGGAGGCCCGCGTGAAGACTCTTAGGGAGGAGGATTTGGACGAGGTCGTAGAGGATAAGAAGGACAAATAA

Function

symbol description
cnga3b Predicted to enable cGMP binding activity; intracellular cAMP-activated cation channel activity; and intracellular cGMP-activated cation channel activity. Predicted to act upstream of or within ion transport and transmembrane transport. Predicted to be located in membrane. Predicted to be integral component of membrane.

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000012297

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00000255 False 1884 mRNA 0.45 5 10771457 10776547
TCONS_00000256 True 1882 mRNA 0.45 5 10771474 10776547

Neighbor

gene id symbol gene type direction distance location
XLOC_000141 atp1b1b coding upstream 32236 10720294 ~ 10739221 (+)
XLOC_000140 MPC2 coding upstream 74854 10683843 ~ 10696603 (+)
XLOC_000138 NA coding upstream 90616 10645364 ~ 10680841 (+)
XLOC_000137 NA coding upstream 103429 10645264 ~ 10668028 (+)
XLOC_000139 AL953910.1 coding upstream 107932 10662312 ~ 10663525 (+)
XLOC_000143 NA coding downstream 4381 10780928 ~ 10787317 (+)
XLOC_000144 knstrn coding downstream 331141 11107688 ~ 11117930 (+)
XLOC_000145 CU929103.1 coding downstream 603950 11380497 ~ 11380611 (+)
XLOC_000146 CU929311.1 coding downstream 692989 11469536 ~ 11469650 (+)
XLOC_000147 GNA12 coding downstream 883314 11659861 ~ 11668782 (+)
XLOC_000136 NA non-coding upstream 153527 10617524 ~ 10617930 (+)
XLOC_000135 NA non-coding upstream 308575 10462044 ~ 10462882 (+)
XLOC_000152 NA non-coding downstream 1156770 11933317 ~ 11933676 (+)
XLOC_000155 NA non-coding downstream 1269945 12046492 ~ 12048509 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000300_01801423_01807504 CNGA3 coding CI01000300 null 1801423 ~ 1808125 (+)