CI01180000_03210894_03214195 (LBH)


Basic Information

Item Value
gene id CI01180000_03210894_03214195
gene name LBH
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01180000
NCBI id null
chromosome length 11503085
location 3210894 ~ 3214720 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01180000_03210894_03214195.mRNA
GATGACTGACGTGATGATCAGCGCCACACCGATGGACGACATGAGGCTCAGTCCCAGCAAAGACCGGCTCACCTTCCAGATCTTTCCGGATCCGTCCGACTTCGAGCGCTGTTGTAAGCTGAAGGACCGGCTGCCGTCCATCGTGGTGGAGCCGACGGAGGGCGAGGTGGAGAGCGGAGAGCTGCGCTGGCCGCCTGAGGAGTTCCTGAAGATTATTGACTATCTGCTGTGAGATGATGATGACGATGGTGTGAGTCTGTCCTGCTCATTCCTGACATTTACACGCTTCTCTGAATAACACACAGATCTTCTTCCAAATAACAGCATATGCCCGTGATGTTTGTAAACAAAGGCATGTGGGTTTTACTGTAAATATTCTCAGTTCAAGATGAATTACAGGTAAGAAGTCTTTGGCTTTAGTGTGTCCGTCTGCATTATCATCCCTGTGTCTCTTTATACAACGGAAATCTGTAGGAAAATCATCATTTGACCGCAGAAGAACTGACCCTTGTGTCTCGTGTTATGGATTTTAAATCTGTCTGTGTTTGTATCCGTGTTCGTATGCGCACATATATATAGATATATATATATATATAGATATATATATATAGATAGATATATAGATATATAGATGTCAGTGTTTGTGATCACAGATCACTTCCCGTCTGTTTGTCGCTCTTCATCTGTAAAGACTCAGGGAGTTTTCTCTTGTTTTGTATGTACGCCACTTTCTCTCTGTGACTGACAGAGGCTGTA

Function

symbol description
lbh Acts upstream of or within embryonic viscerocranium morphogenesis and neural crest cell migration. Predicted to be located in cytoplasm. Predicted to be active in nucleus. Is expressed in several structures, including brain; digestive system; head; neural crest cell; and pleuroperitoneal region. Orthologous to human LBH (LBH regulator of WNT signaling pathway).

GO:

id name namespace
GO:0005737 cytoplasm cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01180000_03210894_03214195.mRNA True 756 mRNA 0.44 3 3210894 3214720

Neighbor

gene id symbol gene type direction distance location
CI01180000_03149731_03154047 NA coding upstream 56806 3149047 ~ 3154088 (+)
CI01180000_03077007_03078238 NA coding upstream 132095 3076607 ~ 3078799 (+)
CI01180000_02998131_03010201 NA coding upstream 200391 2998131 ~ 3010503 (+)
CI01180000_02951792_02968343 STK32C coding upstream 242551 2951792 ~ 2968343 (+)
CI01180000_02690045_02691641 NKX6-2, NKX6-2.L, NKX6.2 coding upstream 518711 2689271 ~ 2693221 (+)
CI01180000_03223456_03224643 LCLAT1 coding downstream 8682 3223402 ~ 3224643 (+)
CI01180000_03250547_03255754 KLHDC3 coding downstream 35827 3250547 ~ 3255868 (+)
CI01180000_03280581_03284614 NA coding downstream 65628 3280348 ~ 3284621 (+)
CI01180000_03286578_03289266 NA coding downstream 71343 3286063 ~ 3289303 (+)
CI01180000_03425920_03442839 SUFU.L, SUFU coding downstream 210794 3425514 ~ 3444183 (+)
G680317 NA non-coding upstream 31328 3123791 ~ 3179566 (+)
G680424 NA non-coding upstream 41438 3165488 ~ 3169456 (+)
G680331 NA non-coding upstream 158869 3051549 ~ 3052025 (+)
G680349 NA non-coding upstream 243137 2966958 ~ 2967757 (+)
G680309 NA non-coding upstream 306730 2903841 ~ 2904164 (+)
G680705 NA non-coding downstream 172507 3387227 ~ 3387686 (+)
G680706 NA non-coding downstream 173568 3388288 ~ 3388573 (+)
G680767 NA non-coding downstream 234365 3449085 ~ 3460969 (+)
G680797 NA non-coding downstream 287389 3502109 ~ 3502348 (+)
G680743 NA non-coding downstream 302905 3517625 ~ 3524426 (+)
G679324 NA other upstream 813534 2388867 ~ 2397360 (+)
G679076 NA other upstream 1411461 1795170 ~ 1799433 (+)
G678946 NA other upstream 1654743 1518353 ~ 1612547 (+)
G678637 NA other upstream 2055222 1149551 ~ 1155672 (+)
CI01180000_03571292_03571611 GNG2.L, GBG2, GNG2 other downstream 338557 3569165 ~ 3573135 (+)
G680736 NA other downstream 550971 3765691 ~ 3784441 (+)
G681137 NA other downstream 1568585 4783305 ~ 4785631 (+)
G681268 NA other downstream 2155690 5370410 ~ 5373762 (+)
G681592 NA other downstream 3258315 6471995 ~ 6478999 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_006994 lbh coding NC_007124.7 CM002897.2 51844058 ~ 51846224 (-)