G678640


Basic Information

Item Value
gene id G678640
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01180000
NCBI id null
chromosome length 11503085
location 747265 ~ 777004 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU799299
ACACGTAGGATGGCTTGAGCGTGAGTAAATCATGAGATAATTTTCATTTTTGGGTGAACTATCCCTTTAAGATGAATCATTTTTTTTCCTCCTCATTCAATAACATGTTTCACTCAAAACATCATATTATGGAAGTAAATTGTTTACAAACACAGTTTCATGTTCATGAAAGTGAGATAGTGTTCATTTCTTGTAGGTAATTCTATAGATTTGATACATTCTTCTATTACGATTGTTTTGATTGTAAATACCTCTGCAGAAATTGAGATTAGATGACCTGGTGGTAGAAGTCCGCCCTCGGGCTGATCTATGAATTCTGGGAATTTTTTTTCACGTCACGTCAAGTTACTGTCCCATTGAGAGCCTCTTACTCAAGCGAACGGTGAATAAACCCCCTCACTGGTGTGTTTTAATGGACCACTCAAGTTAGTACTCCTTTCATTTCTTTCAGTCGCCCACATCACCGAGGCAAAACACTTTTGAAAAGCATTGGAAGCGTTCCGGAATGCCTGTAGAGAACGGAAGTGTTCACTGATGAGGATGTGAACTGGCTGAATGGATATTTCTCCGGATGGGTGTTGCAGACATTGTGGGATGTCCTGTCTTAGACGTGGAACTAAACACTCAAGGGAAACTCTGGGTCCGACATGTTTCACGACAGGCCAATTATGTCACGCATGTTGAGAACTAACTCTGAAACAAAGCCGGAAGATGATTGAAAACCAGAATATGTCGGTTGCATGTTTAGTCAGCGATGTAGGGAAGTTTTGCTGTGGCTCACTTGACAACATCAGAAGTGATGGACGTTGAATTGTTGATGTGGGTTTATTGAGCTGATGTCATTCACCTGTGCGTGACCCCGTCCTGACTAGGTTTGGGAATCAGAATTTACGCTGAATGTTTTCCATGATTTACTTCATCAAAAGCATTAAAAGAATTCTGAAAGAAATCACAATCACTGAATTCCGTGTATAATTCCCATCACTAGTCACACCTCATCCGCCCATTTTCTGGAATCAGTCACTGGGCCGTGTTGACGCTCGTCTGTTGATACTATCTGGCCTTTGTTTGCAGGTGACTGTTTGTAACGACTGCAGCTGCACGTCACTCATCAGATAGACGTCGCCTCCCTTCTCGTCCTCCTCCTCCCTATTATCTGTTTTCTTCTTTCCACCCGATCAGGAGGAGGGACATACCCCAAGATCTCCAAAGGCCGCAGTTGTCTTGGTTACTTGTGCGCACTAATCCAATATAGGTGGATGCTCCAAAACTGGGTTGCAAATGTAAAAATAGTGCTTTCCTCTTGAGCAGACCTTCCTTGAGCTCCATCAGAAAGGCAGTTTCTTACTTAGAAGTTAGGAAATGTTAATTATGTTGTGATTTTTGCCTGAATGCTTTGGGTACTTGGGGCAGTTCCATATTTCTTTCACTGTTTTCACTTCCCGACAAAGACAGGAAGTGTTTTAACAGTAGTGCAACAGCAAATGATGTTTGTTGACACTTCATGCGTATTATTATATATTTCACAGGGCTGTCAATCAATTAAAAAAAATATAACATGCCAATTATTTGTTCAGATTTATTGCATATTAATATTATTAGCTAAAAATTTCCCAAATGATTAAAGACAAAACGTTTCTTTAAAGTCAGTGTAAATTGTTTTGTCTTTATATCATTGAATGTACACTCTAAAAAATGCTGGGTTAAAAACAACCCAAGTTGGGTTAAATATGGACAAATCCAGCATATTGGGTTAAATGTTTGACCCAACCTGCTGGGTAGTTTTATTTAACTCAACTTTTGTTTAAAAATGACTATATGTCTGGCTTAAAATGAACCCAAAATATGTTGGAAATTAAAAATCAAACACTTAATTACTAGAGAAAACCATAATAATTAAAAGGTGAACATTTATTAATAAGCAATTTATTATTTATTAAATGTTCATTTAATAAATGTTAATTTCCATCTCATTTAGGGTTCATTTTAAGCGGGCAATACAGTAATTTTTAAACAATAATTGAGTTAAATAAAACTACCCAGCAGGTTGGGTCAAACATTTAACCCAATCGCTGGGTTTGTCTATATATTTAACCCAACTTGGGTTGTTTTTAACCCAGCATTTTTTTAGACTGTATAGTCCATAATCCACAACAATCCATTTTACAGTCGAGTTTTGTTAAAAGTTGTTCACATCAAATGCGTTGTTGCATTCTGGCTGCAGTATTTTTTATTGCTTTTCTACGTGCATAAACATGAGATTAATTTAGTTAATTATTTGGCATATTTTTAATGACACTAAATTAATGTTACATTAACAGTCCAAGTATTTTATCATTTTTTAGTGCAGCCCCAAGAATGATGGGAATATAGTTTGGTCGCACAAACCTGTAACCTTGAAAATTGGATGGAATGTGAAGTATTTTCAGGAAAGAGGTTATACAGTAAATATTCACAGTTGCAATTTATTATAATTAATACATTTCCTTAACTGACACGCCCCTTACTCAAAAAGTCTGAGGTTAAAGGGTTAGTTCACCCAAAAATGAAAATTCTGTCATTAATTACTCACCCTCATGTCGTCCCGTAAGACCTTCGTTCATCTTCAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU799299 True 2609 lncRNA 0.37 2 747265 777004

Neighbor

gene id symbol gene type direction distance location
CI01180000_00737754_00743866 NA coding upstream 3054 735310 ~ 744211 (+)
CI01180000_00661446_00671602 MSH6 coding upstream 75077 661109 ~ 672188 (+)
CI01180000_00427700_00437883 NA coding upstream 308799 427650 ~ 438466 (+)
CI01180000_00368639_00375465 ZC3H6 coding upstream 371018 368639 ~ 376247 (+)
CI01180000_00361420_00364335 NA coding upstream 382139 361420 ~ 365126 (+)
CI01180000_00812535_00858607 NA coding downstream 34853 811857 ~ 859005 (+)
CI01180000_00862066_00867985 NA coding downstream 83742 860746 ~ 868112 (+)
CI01180000_00947514_00949868 NA coding downstream 169417 946421 ~ 950906 (+)
CI01180000_00955725_01050852 SIPA1L2 coding downstream 177918 954922 ~ 1051826 (+)
CI01180000_01196818_01224406 EGLN1B, EGLN1, EGLN1A coding downstream 419782 1196786 ~ 1224915 (+)
G678712 NA non-coding upstream 24808 722123 ~ 722457 (+)
G678654 NA non-coding upstream 32419 714434 ~ 714846 (+)
G678703 NA non-coding upstream 48211 698675 ~ 699054 (+)
G678632 NA non-coding upstream 62222 677874 ~ 685043 (+)
G678595 NA non-coding upstream 196091 503871 ~ 551174 (+)
G678633 NA non-coding downstream 603 777607 ~ 779619 (+)
G678629 NA non-coding downstream 2790 779794 ~ 780590 (+)
G678717 NA non-coding downstream 6911 783915 ~ 784202 (+)
G678720 NA non-coding downstream 9357 786361 ~ 786662 (+)
G678653 NA non-coding downstream 21685 798689 ~ 798938 (+)
G678440 NA other upstream 595613 147934 ~ 151652 (+)
G678751 NA other downstream 282839 1059843 ~ 1066091 (+)
G678637 NA other downstream 372547 1149551 ~ 1155672 (+)
G678946 NA other downstream 741349 1518353 ~ 1612547 (+)
G679076 NA other downstream 1018166 1795170 ~ 1799433 (+)
G679324 NA other downstream 1611863 2388867 ~ 2397360 (+)

Expression


Co-expression Network