G680180


Basic Information

Item Value
gene id G680180
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01180000
NCBI id null
chromosome length 11503085
location 2635775 ~ 2664245 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU801002
GAGCCATCGGATTTCATCAAAAATATCTTCATTTGTGTTCTGAAGATGAACGAAGGTCTTACGGGTGTGGAACGACATGAGGGTGAGTAATTAATGACATTATTTTCATTTTTGGGTGAACTAACCCTTTAAAGGGGACCTATAATGCCCCTTTTACAAGATGTAATATAAGTCTCTGGTGTCTCCAGAATGTGTCTGTGAAGTTTCAGCTCAAAATACCCCACAGATCATTTATTATAGCTTGTCAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU801002 True 248 lncRNA 0.38 2 2635775 2664245

Neighbor

gene id symbol gene type direction distance location
CI01180000_02574027_02588521 NA coding upstream 46951 2574027 ~ 2588824 (+)
CI01180000_02541296_02567509 CFAP46 coding upstream 67992 2541296 ~ 2567783 (+)
CI01180000_02362001_02362428 NA coding upstream 272245 2361960 ~ 2363530 (+)
CI01180000_02322594_02323609 NA coding upstream 312023 2320352 ~ 2323752 (+)
CI01180000_02158036_02158965 HS3ST1L1 coding upstream 476553 2157350 ~ 2159222 (+)
CI01180000_02690045_02691641 NKX6-2, NKX6-2.L, NKX6.2 coding downstream 25026 2689271 ~ 2693221 (+)
CI01180000_02951792_02968343 STK32C coding downstream 287547 2951792 ~ 2968343 (+)
CI01180000_02998131_03010201 NA coding downstream 333886 2998131 ~ 3010503 (+)
CI01180000_03077007_03078238 NA coding downstream 412362 3076607 ~ 3078799 (+)
CI01180000_03149731_03154047 NA coding downstream 484802 3149047 ~ 3154088 (+)
G680148 NA non-coding upstream 63036 2572412 ~ 2572739 (+)
G679346 NA non-coding upstream 193204 2442275 ~ 2442571 (+)
G679047 NA non-coding upstream 393902 2238490 ~ 2241873 (+)
G679218 NA non-coding upstream 420841 2210789 ~ 2214934 (+)
G679228 NA non-coding upstream 434340 2197189 ~ 2201435 (+)
G680204 NA non-coding downstream 18989 2683234 ~ 2683580 (+)
G680227 NA non-coding downstream 74472 2738717 ~ 2739535 (+)
G680239 NA non-coding downstream 99777 2764022 ~ 2764255 (+)
G680241 NA non-coding downstream 104179 2768424 ~ 2769025 (+)
G679324 NA other upstream 238415 2388867 ~ 2397360 (+)
G679076 NA other upstream 836342 1795170 ~ 1799433 (+)
G678946 NA other upstream 1079624 1518353 ~ 1612547 (+)
G678637 NA other upstream 1480103 1149551 ~ 1155672 (+)
G678751 NA other upstream 1569684 1059843 ~ 1066091 (+)
CI01180000_03571292_03571611 GNG2.L, GBG2, GNG2 other downstream 889032 3569165 ~ 3573135 (+)
G680736 NA other downstream 1101446 3765691 ~ 3784441 (+)
G681137 NA other downstream 2119060 4783305 ~ 4785631 (+)
G681268 NA other downstream 2706165 5370410 ~ 5373762 (+)

Expression


Co-expression Network