G680204


Basic Information

Item Value
gene id G680204
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01180000
NCBI id null
chromosome length 11503085
location 2683234 ~ 2683580 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU801038
CAGTCTACATCCCTAACCGAAGCCTGCAATCGCTAAATGAGAAAAGGCTCATGGTACCATCACAGAGAGGCACAAAATCACTCTCCAGAACATTTTCATTCACTGTTCCTTGCTGTTGGAATGATCTCTCCGCCTTCATCCGGAATGCAGAATCCCTGGCAATATTCAAAAGATAGCTGAAAACTCATCTCTTTTGAGAGCACTTAACCTCATCATAAAAAAAAAAAAAAAACCTATACTTTCACTTTCCTTTAACCCCTCTCTATTCTAGCTTATGCTACTCTAAGCAATGTCTGAAACTTGTATTGTAAGCACTTCTTATGCCTATTGACTCTTCACGATGATTT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU801038 True 347 lncRNA 0.39 1 2683234 2683580

Neighbor

gene id symbol gene type direction distance location
CI01180000_02613130_02639905 NA coding upstream 43312 2612278 ~ 2639922 (+)
CI01180000_02574027_02588521 NA coding upstream 94410 2574027 ~ 2588824 (+)
CI01180000_02541296_02567509 CFAP46 coding upstream 115451 2541296 ~ 2567783 (+)
CI01180000_02362001_02362428 NA coding upstream 319704 2361960 ~ 2363530 (+)
CI01180000_02322594_02323609 NA coding upstream 359482 2320352 ~ 2323752 (+)
CI01180000_02690045_02691641 NKX6-2, NKX6-2.L, NKX6.2 coding downstream 5691 2689271 ~ 2693221 (+)
CI01180000_02951792_02968343 STK32C coding downstream 268212 2951792 ~ 2968343 (+)
CI01180000_02998131_03010201 NA coding downstream 314551 2998131 ~ 3010503 (+)
CI01180000_03077007_03078238 NA coding downstream 393027 3076607 ~ 3078799 (+)
CI01180000_03149731_03154047 NA coding downstream 465467 3149047 ~ 3154088 (+)
G680180 NA non-coding upstream 18989 2635775 ~ 2664245 (+)
G680148 NA non-coding upstream 110495 2572412 ~ 2572739 (+)
G679346 NA non-coding upstream 240663 2442275 ~ 2442571 (+)
G679047 NA non-coding upstream 441361 2238490 ~ 2241873 (+)
G679218 NA non-coding upstream 468300 2210789 ~ 2214934 (+)
G680227 NA non-coding downstream 55137 2738717 ~ 2739535 (+)
G680239 NA non-coding downstream 80442 2764022 ~ 2764255 (+)
G680241 NA non-coding downstream 84844 2768424 ~ 2769025 (+)
G680242 NA non-coding downstream 87208 2770788 ~ 2771029 (+)
G679324 NA other upstream 285874 2388867 ~ 2397360 (+)
G679076 NA other upstream 883801 1795170 ~ 1799433 (+)
G678946 NA other upstream 1127083 1518353 ~ 1612547 (+)
G678637 NA other upstream 1527562 1149551 ~ 1155672 (+)
G678751 NA other upstream 1617143 1059843 ~ 1066091 (+)
CI01180000_03571292_03571611 GNG2.L, GBG2, GNG2 other downstream 869697 3569165 ~ 3573135 (+)
G680736 NA other downstream 1082111 3765691 ~ 3784441 (+)
G681137 NA other downstream 2099725 4783305 ~ 4785631 (+)
G681268 NA other downstream 2686830 5370410 ~ 5373762 (+)

Expression


Co-expression Network