G680296


Basic Information

Item Value
gene id G680296
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01180000
NCBI id null
chromosome length 11503085
location 2857324 ~ 2858311 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU801135
ACGATACAAGAGAAACATGAACTCAAAAGTAAGAAAAAAAACGAGGGTGTCGCCAAAAGAAATAATCAAAACAAAACCCCATTAACTAGGGCCCACGACCCTAAACTAACTACCAAAAATAAAATGTAGAAACAAAACCGAAAACTTCGGCGTATACGACGCCGTAACTAAACTTATTACATAAATAACCAAAAATACAATGGAGGCGAACACCCACACACTAACTAACATAAATCACTAACTACCAGATCGAGCCGTCACTCACTACAGTTGTCAGGGAGGTTGAGATTAACACCGAGTAGGGCTGTACATAACAAAGGGATCATTATTTGCCAATCAAGACCGAATCAAGTGGTTAACAGATAACGACTTCACACCAGCATACGAATGCGCACATACAATGAACATGTGAAACTTGCATCACGCTCTAACTCCATCAGATTAACTATTACACGAGTGCATCAAACAACTCACAGAATACTGTCTCAGTAAACCACAGACTAAGTGAACAGTTCAAAGACACGTAGATTGGCTGAGTGCTTCTGGCTCGACAAAGGTGAGTGAGGTCCGAAGCCCAAAAAGCTCACTTGCAGATGGATGCTGGTCTTCCGGTCCAATAAGATCAACCTAAACAACTCGATGGATAGATAACAAAAGAGAGGGAGGAAACAAACAAAAAAAACAAAATACAAAACATACGTGGAACATAACAATCCAGCTAGGTACATCATCGATTACCCCATTAAGGTCGGCCAGAAATCTTGGAGTAATCTTTGATGACCAACTAACCTTCAAAGACCACATTGCAAAGACATTGCATTGACGCTTGCTTGCAGATCTACCACAGGCTCAGCACCCTCCTACTTCCACTCATTTTTGTGAGTCTACACCCCTACCAGAAGCCTGTGATCGCTAAATGAGCGAAGGCTCGTGGTACCATCACAGAGAGGCACAAAATCACTCTCCAGAACATTTTCATTCACTGTTC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU801135 True 988 lncRNA 0.42 1 2857324 2858311

Neighbor

gene id symbol gene type direction distance location
CI01180000_02690045_02691641 NKX6-2, NKX6-2.L, NKX6.2 coding upstream 165141 2689271 ~ 2693221 (+)
CI01180000_02613130_02639905 NA coding upstream 217402 2612278 ~ 2639922 (+)
CI01180000_02574027_02588521 NA coding upstream 268500 2574027 ~ 2588824 (+)
CI01180000_02541296_02567509 CFAP46 coding upstream 289541 2541296 ~ 2567783 (+)
CI01180000_02362001_02362428 NA coding upstream 493794 2361960 ~ 2363530 (+)
CI01180000_02951792_02968343 STK32C coding downstream 93481 2951792 ~ 2968343 (+)
CI01180000_02998131_03010201 NA coding downstream 139820 2998131 ~ 3010503 (+)
CI01180000_03077007_03078238 NA coding downstream 218296 3076607 ~ 3078799 (+)
CI01180000_03149731_03154047 NA coding downstream 290736 3149047 ~ 3154088 (+)
CI01180000_03210894_03214195 LBH coding downstream 352583 3210894 ~ 3214720 (+)
G680294 NA non-coding upstream 3302 2853807 ~ 2854022 (+)
G680263 NA non-coding upstream 50862 2805661 ~ 2806462 (+)
G680242 NA non-coding upstream 86295 2770788 ~ 2771029 (+)
G680241 NA non-coding upstream 88299 2768424 ~ 2769025 (+)
G680239 NA non-coding upstream 93069 2764022 ~ 2764255 (+)
G680219 NA non-coding downstream 19000 2877311 ~ 2889630 (+)
G680303 NA non-coding downstream 31544 2889855 ~ 2890291 (+)
G680304 NA non-coding downstream 34848 2893159 ~ 2893439 (+)
G680306 NA non-coding downstream 37215 2895526 ~ 2895933 (+)
G680308 NA non-coding downstream 44137 2902448 ~ 2902669 (+)
G679324 NA other upstream 459964 2388867 ~ 2397360 (+)
G679076 NA other upstream 1057891 1795170 ~ 1799433 (+)
G678946 NA other upstream 1301173 1518353 ~ 1612547 (+)
G678637 NA other upstream 1701652 1149551 ~ 1155672 (+)
CI01180000_03571292_03571611 GNG2.L, GBG2, GNG2 other downstream 694966 3569165 ~ 3573135 (+)
G680736 NA other downstream 907380 3765691 ~ 3784441 (+)
G681137 NA other downstream 1924994 4783305 ~ 4785631 (+)
G681268 NA other downstream 2512099 5370410 ~ 5373762 (+)
G681592 NA other downstream 3614724 6471995 ~ 6478999 (+)

Expression


Co-expression Network