XLOC_015656 (CT867973.1)


Basic Information

Item Value
gene id XLOC_015656
gene name CT867973.1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 36103309 ~ 36157913 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00031229
TGTGTGACTACTGGAGGTGGAGGATACAAGATTATCTTTGGTACAGGCACAAAACTGATAGTTGAAACAAAAACTGAAGTGAAGCCGAATATTTACCAAGTGGGAAACTCATGCCTGGCAACTGACTTCACAAAGCACAACGTGTTCAACATTACCGATTCACCTTTTCTTAAAACGTCGGCTGTCCGATATTCAGGCCAAAATTACTACAGCAGCTTAAAATTCGGCTTAGATGACTGCGAGGAGACAGGCGTTTGTTCATCATCCGGTGGAGGTACAGATTTAGAAAGAGATGAAAAAGTCAACTTCTTGTCACTGGGCATCTTCTGGCTGAGGATTCTCTTTCTGAAGACAGTCGTTTTCAATGTGCTGGTGACTTTCAAAGCATGGATGAGCTAA
>TCONS_00031230
TGACTACTGGAGGTGGAGGATACAAGATTATCTTTGGTACAGGCACAAAACTGATAGTTGAAACAA
>TCONS_00031244
CTTAGTGTGACTCAGGGAGGAGctcagaaaataatatttgggaAAGGCACAAAGCTCACTGTAATTACAGAAACTGAAGTGAAGCCGAATATTTACCAAGTGGGAAACTCATGCCTGGCAACTGACTTCACAAAGCACAACGTGTTCAACATTACCGATTCACCTTTTCTTAAAACGTCGGCTGTCCGATATTCAGGCCAAAATTACTACAGCAGCTTAAAATTCGGCTTAGATGACTGCGAGGAGACAGGCGTTTGTTCATCATCCGGTGGAGGTACAGATTTAGAAAGAGATGAAAAAGTCAACTTCTTGTCACTGGGCATCTTCTGGCTGAGGATTCTCTTTCTGAAGACAGTCGTTTTCAATGTGCTGGTGACTTTCAAAGCATGGATGAGCTAACGTCTCAGAAAAACACCACGTTTCATCAGTTAAATTCATGAGACTGAACTTTTACTGACGACAACAGAAAAAGCTGCATCCCATTCCAGATCATCAGATGTGCACAGATGTTGTTAAATAGCAATGGAGGGATTATATAACCGCCCTCAGTAATGCAAAATCATTATTGATTTGAGAATTACATACACATTTGAATGTCATATGTTTAtataggatttttaaaaatatttcattaagcTTAGCGTACAGTAGAGGTATATTTGTTTCAAATTTAGATTATTTCTCCTGTGTAATTTCTATTTTAAGGTTttctacatatatattttttgtaaacatCTTAAATTGCTTTGGCGCTGTATTACATCTGAATATTTCTGACTATATAGCTACAActtattatttacaattaattTACAACCTATTCATCTCATTAAGTAGATTTGTGCTTTTTTTACATTGGCAGATGTTGTGTACTGTACAAagaatatgcaaataaaatgtgtaaatg
>TCONS_00031245
TGACTCAGGGAGGAGctcagaaaataatatttgggaAAGGCACAAAGCTCACTGTAATTACAG
>TCONS_00031252
TGACTGGAGGTTTTGACAAGCTTATATTTGGGAAAGGCACAAATCTGATTATTGAAACAC
>TCONS_00031253
GGAGGTTTTGACAAGCTTATATTTGGGAAAGGCACAAATCTGATTATTGAAACACAAACTGAAGTGAAGCCGAATATTTACCAAGTGGGAAACTCATGCCTGGCAACTGACTTCACAAAGCACAACGTGTTCAACATTACCGATTCACCTTTTCTTAAAACGTCGGCTGTCCGATATTCAGGCCAAAATTACTACAGCAGCTTAAAATTCGGCTTAGATGACTGCGAGGAGACAGGTAAGAATGATCACAAAGCTTTTACATCTTCATCAATCAGTTAATGGTCACATTAGATTAATCAGCTTTTCTCTACTTTCAGGCGTTTGTTCATCATCCGGTGGAGGTACAGATTTAGAAAGAGATGAAAAAGTCAACTTCTTGTCACTGGGCATCTTCTGGCTGAGGATTCTCTTTCTGAAGACAGTCGTTTTCAATGTGCTGGTGACTTTCAAAGCATGGATGAGCTAACGTCTCAGAAAAACACCACGTTTCATCAGTTAAATTCATGAGACTGAACTTTTACTGACGACAACAGAAAAAGCTGCATCCCATTCCAGATCATCAGATGTGCACAGATGTTGTTAAATAGCAATGGAGGGATTATATAACCGCCCTCAGTAATGCAAAATCATTATTGATTTGAGAATTACATACACATTTGAATGTCATATGTTTAtataggatttttaaaaatatttcattaagcTTAGCGTACAGTAGAGGTATATTTGTTTCAAATTTAGATTATTTCTCCTGTGTAATTTCTATTTTAAGGTTttctacatatatattttttgtaaacatCTTAAATTGCTTTGGCGCTGTATTACATCTGAATATTTCTGACTATATAGCTACAActtattatttacaattaattTACAACCTATTCATCTCATTAAGTAGATTTGTGCTTTTTTTACATTGGCAGATGTTGTGTACTGTACAAagaatatgcaaataaaatgtgtaaatgac
>TCONS_00031257
TGACTTCTGGAAGTGGTGCTTACAAGCTTTTCTTTGGAACAGGCACAAAGTTGATAGTTGAAACAA
>TCONS_00031258
ACTTCTGGAAGTGGTGCTTACAAGCTTTTCTTTGGAACAGGCACAAAGTTGATAGTTGAAACAAAAACTGAAGTGAAGCCGAATATTTACCAAGTGGGAAACTCATGCCTGGCAACTGACTTCACAAAGCACAACGTGTTCAACATTACCGATTCACCTTTTCTTAAAACGTCGGCTGTCCGATATTCAGGCCAAAATTACTACAGCAGCTTAAAATTCGGCTTAGATGACTGCGAGGAGACAGGCGTTTGTTCATCATCCGGTGGAGGTACAGATTTAGAAAGAGATGAAAAAGTCAACTTCTTGTCACTGGGCATCTTCTGGCTGAGGATTCTCTTTCTGAAGACAGTCGTTTTCAATGTGCTGGTGACTTTCAAAGCATGGATGAGCTAACGTCTCAGAAAAACACCACGTTTCATCAGTTAAATTCATGAGACTGAACTTTTACTGACGACAACAGAAAAAGCTGCATCCCATTCCAGATCATCAGATGTGCACAGATGTTGTTAAATAGCAATGGAGGGATTATATAACCGCCCTCAGTAATGCAAAATCATTATTGATTTGAGAATTACATACACATTTGAATGTCATATGTTTAtataggatttttaaaaatatttcattaagcTTAGCGTACAGTAGAGGTATATTTGTTTCAAATTTAGATTATTTCTCCTGTGTAATTTCTATTTTAAGGTTttctacatatatattttttgtaaacatCTTAAATTGCTTTGGCGCTGTATTACATCTGAATATTTCTGACTATATAGCTACAActtattatttacaattaattTACAACCTATTCATCTCATTAAGTAGATTTGTGCTTTTTTTACATTGGCAGATGTTGTGTACTGTACAAagaatatgcaaataaaatgtgtaaatgac
>TCONS_00031275
GTGACTGATAGCGGAGGATGGAAAGTAATATTTGGAAAAGGAACCAAACTGACCATCGAGTCAGAAACTGAAGTGAAGCCGAATATTTACCAAGTGGGAAACTCATGCCTGGCAACTGACTTCACAAAGCACAACGTGTTCAACATTACCGATTCACCTTTTCTTAAAACGTCGGCTGTCCGATATTCAGGCCAAAATTACTACAGCAGCTTAAAATTCGGCTTAGATGACTGCGAGGAGACAGGCGTTTGTTCATCATCCGGTGGAGGTACAGATTTAGAAAGAGATGAAAAAGTCAACTTCTTGTCACTGGGCATCTTCTGGCTGAGGATTCTCTTTCTGAAGACAGTCGTTTTCAATGTGCTGGTGACTTTCAAAGCATGGATGAGCTAACGTCTCAGAAAAACACCACGTTTCATCAGTTAAATTCATGAGACTGAACTTTTACTGACGACAACAGAAAAAGCTGCATCCCATTCCAGATCATCAGATGTGCACAGATGTTGTTAAATAGCAATGGAGGGATTATATAACCGCCCTCAGTAATGCAAAATCATTATTGATTTGAGAATTACATACACATTTGAATGTCATATGTTTAtataggatttttaaaaatatttcattaagcTTAGCGTACAGTAGAGGTATATTTGTTTCAAATTTAGATTATTTCTCCTGTGTAATTTCTATTTTAAGGTTttctacatatatattttttgtaaacatCTTAAATTGCTTTGGCGCTGTATTACATCTGAATATTTCTGACTATATAGCTACAActtattatttacaattaattTACAACCTATTCATCTCATTAAGTAGATTTGTGCTTTTTTTACATTGGCAGATGTTGTGTACTGTACAAagaatatgcaaataaaatgtgt
>TCONS_00031276
TGACTGATAGCGGAGGATGGAAAGTAATATTTGGAAAAGGAACCAAACTGACCATCGAGTCAG

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000075807 ENSDARG00000104132 ENSDARG00000110275 ENSDARG00000114801 ENSDARG00000116308

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00031229 False 399 mRNA 0.43 4 36103309 36155743
TCONS_00031230 False 66 TR_J_gene 0.39 1 36103313 36103378
TCONS_00031244 False 907 mRNA 0.35 5 36109002 36157911
TCONS_00031245 False 63 TR_J_gene 0.41 1 36109009 36109071
TCONS_00031252 False 60 TR_J_gene 0.37 1 36112268 36112327
TCONS_00031253 False 976 mRNA 0.35 4 36112273 36157913
TCONS_00031257 False 66 TR_J_gene 0.39 1 36114192 36114257
TCONS_00031258 False 903 mRNA 0.35 5 36114194 36157913
TCONS_00031275 False 896 mRNA 0.36 5 36121373 36157906
TCONS_00031276 True 63 TR_J_gene 0.43 1 36121374 36121436

Neighbor

gene id symbol gene type direction distance location
XLOC_015655 BX681417.7 coding upstream 393 36102854 ~ 36102916 (+)
XLOC_015654 traj31 coding upstream 639 36102608 ~ 36102670 (+)
XLOC_015653 traj11 coding upstream 1186 36102061 ~ 36102123 (+)
XLOC_015652 BX681417.10 coding upstream 1485 36101762 ~ 36101824 (+)
XLOC_015651 BX681417.16 coding upstream 1867 36101377 ~ 36101442 (+)
XLOC_015702 NA coding downstream 22330 36180243 ~ 36583275 (+)
XLOC_015703 NA coding downstream 87009 36244922 ~ 36247469 (+)
XLOC_015704 NA coding downstream 221326 36379239 ~ 36471110 (+)
XLOC_015705 NA coding downstream 394779 36552692 ~ 36564473 (+)
XLOC_015706 ing5b coding downstream 448106 36606019 ~ 36636866 (+)
XLOC_015646 BX681417.3 non-coding upstream 4281 36098969 ~ 36099028 (+)
XLOC_015636 BX681417.2 non-coding upstream 8990 36092953 ~ 36094319 (+)
XLOC_015626 BX571812.1 non-coding upstream 271864 35831329 ~ 35831445 (+)
XLOC_015623 NA non-coding upstream 489011 35612555 ~ 35614298 (+)
XLOC_015619 FP236741.1 non-coding upstream 522018 35512002 ~ 35581291 (+)
XLOC_015707 NA non-coding downstream 481018 36638931 ~ 36642762 (+)

Expression


Co-expression Network