RNA id: TCONS_00031275


Basic Information

Item Value
RNA id TCONS_00031275
length 896
RNA type mRNA
GC content 0.36
exon number 5
gene id XLOC_015656
representative False

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 36103309 ~ 36157913 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTGACTGATAGCGGAGGATGGAAAGTAATATTTGGAAAAGGAACCAAACTGACCATCGAGTCAGAAACTGAAGTGAAGCCGAATATTTACCAAGTGGGAAACTCATGCCTGGCAACTGACTTCACAAAGCACAACGTGTTCAACATTACCGATTCACCTTTTCTTAAAACGTCGGCTGTCCGATATTCAGGCCAAAATTACTACAGCAGCTTAAAATTCGGCTTAGATGACTGCGAGGAGACAGGCGTTTGTTCATCATCCGGTGGAGGTACAGATTTAGAAAGAGATGAAAAAGTCAACTTCTTGTCACTGGGCATCTTCTGGCTGAGGATTCTCTTTCTGAAGACAGTCGTTTTCAATGTGCTGGTGACTTTCAAAGCATGGATGAGCTAACGTCTCAGAAAAACACCACGTTTCATCAGTTAAATTCATGAGACTGAACTTTTACTGACGACAACAGAAAAAGCTGCATCCCATTCCAGATCATCAGATGTGCACAGATGTTGTTAAATAGCAATGGAGGGATTATATAACCGCCCTCAGTAATGCAAAATCATTATTGATTTGAGAATTACATACACATTTGAATGTCATATGTTTAtataggatttttaaaaatatttcattaagcTTAGCGTACAGTAGAGGTATATTTGTTTCAAATTTAGATTATTTCTCCTGTGTAATTTCTATTTTAAGGTTttctacatatatattttttgtaaacatCTTAAATTGCTTTGGCGCTGTATTACATCTGAATATTTCTGACTATATAGCTACAActtattatttacaattaattTACAACCTATTCATCTCATTAAGTAGATTTGTGCTTTTTTTACATTGGCAGATGTTGTGTACTGTACAAagaatatgcaaataaaatgtgt

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000187002

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00031209 lncRNA upstream 27054 36093561 ~ 36094319 (+) True XLOC_015636
TCONS_00033607 lncRNA upstream 42735 36072953 ~ 36078638 (+) True XLOC_015631
TCONS_00033606 lncRNA upstream 507075 35612555 ~ 35614298 (+) False XLOC_015623
TCONS_00031186 lncRNA upstream 515476 35603637 ~ 35605897 (+) False XLOC_015622
TCONS_00033278 lncRNA upstream 540082 35579580 ~ 35581291 (+) True XLOC_015619
TCONS_00033608 lncRNA downstream 22337 36180243 ~ 36367124 (+) False XLOC_015702
TCONS_00033609 lncRNA downstream 22337 36180243 ~ 36583275 (+) False XLOC_015702
TCONS_00033610 lncRNA downstream 87016 36244922 ~ 36247469 (+) True XLOC_015703
TCONS_00033279 lncRNA downstream 221333 36379239 ~ 36425187 (+) False XLOC_015704
TCONS_00033280 lncRNA downstream 266948 36424854 ~ 36471110 (+) True XLOC_015704
TCONS_00031202 mRNA upstream 41466 36046126 ~ 36079907 (+) False XLOC_015631
TCONS_00031203 mRNA upstream 44794 36046192 ~ 36076579 (+) False XLOC_015631
TCONS_00031201 mRNA upstream 99765 36015049 ~ 36021608 (+) True XLOC_015630
TCONS_00031199 mRNA upstream 100127 36004381 ~ 36021246 (+) False XLOC_015630
TCONS_00031200 mRNA upstream 106586 36007449 ~ 36014787 (+) False XLOC_015630
TCONS_00031284 mRNA downstream 448113 36606019 ~ 36608762 (+) False XLOC_015706
TCONS_00031285 mRNA downstream 450481 36608387 ~ 36635858 (+) False XLOC_015706
TCONS_00031286 mRNA downstream 458924 36616830 ~ 36636751 (+) False XLOC_015706
TCONS_00031287 mRNA downstream 458924 36616830 ~ 36636866 (+) False XLOC_015706
TCONS_00031288 mRNA downstream 462105 36620011 ~ 36635859 (+) True XLOC_015706
TCONS_00031274 other upstream 427 36120881 ~ 36120946 (+) True XLOC_015694
TCONS_00031273 other upstream 697 36120620 ~ 36120676 (+) True XLOC_015693
TCONS_00031272 other upstream 1048 36120263 ~ 36120325 (+) True XLOC_015692
TCONS_00031271 other upstream 1769 36119542 ~ 36119604 (+) True XLOC_015691
TCONS_00031270 other upstream 2185 36119123 ~ 36119188 (+) True XLOC_015690
TCONS_00031294 other downstream 595743 36753649 ~ 36753758 (+) True XLOC_015713
TCONS_00031307 other downstream 982568 37140474 ~ 37143617 (+) True XLOC_015719
TCONS_00031312 other downstream 1034535 37192441 ~ 37201587 (+) True XLOC_015720
TCONS_00031331 other downstream 1678713 37836619 ~ 37836920 (+) False XLOC_015734
TCONS_00031335 other downstream 1716865 37874771 ~ 37878304 (+) False XLOC_015735

Expression Profile

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