Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00031186 |
| length | 915 |
| lncRNA type | retained_intron |
| GC content | 0.46 |
| exon number | 3 |
| gene id | XLOC_015622 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_007113.7 |
| NCBI id | CM002886.2 |
| chromosome length | 59640629 |
| location | 35603637 ~ 35611789 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0006974 | cellular response to DNA damage stimulus | biological_process |
| GO:0007281 | germ cell development | biological_process |
| GO:0006468 | protein phosphorylation | biological_process |
| GO:0044819 | mitotic G1/S transition checkpoint | biological_process |
| GO:0032465 | regulation of cytokinesis | biological_process |
| GO:0090166 | Golgi disassembly | biological_process |
| GO:0016310 | phosphorylation | biological_process |
| GO:0000278 | mitotic cell cycle | biological_process |
| GO:0035770 | ribonucleoprotein granule | cellular_component |
| GO:0005813 | centrosome | cellular_component |
| GO:0000922 | spindle pole | cellular_component |
| GO:0005634 | nucleus | cellular_component |
| GO:0036464 | cytoplasmic ribonucleoprotein granule | cellular_component |
| GO:0005737 | cytoplasm | cellular_component |
| GO:0016740 | transferase activity | molecular_function |
| GO:0005524 | ATP binding | molecular_function |
| GO:0000166 | nucleotide binding | molecular_function |
| GO:0004672 | protein kinase activity | molecular_function |
| GO:0004674 | protein serine/threonine kinase activity | molecular_function |
| GO:0016301 | kinase activity | molecular_function |
| id | description |
|---|---|
| ko04068 | FoxO signaling pathway |
| ko04625 | C-type lectin receptor signaling pathway |
| ko05152 | Tuberculosis |
| ko01001 | Protein kinases |
| ko03036 | Chromosome and associated proteins |
| ko03400 | DNA repair and recombination proteins |
| id | description |
|---|---|
| ZDB-GENE-030131-6134 | Predicted to enable protein serine/threonine kinase activity. Predicted to be involved in Golgi disassembly; cellular response to DNA damage stimulus; and regulation of cell cycle process. Predicted to act upstream of or within protein phosphorylation. Predicted to be active in cytoplasm; microtubule cytoskeleton; and nucleus. Is expressed in liver; spinal cord; and spleen. Orthologous to human PLK3 (polo like kinase 3). |
| ensembl_id | ENSDART00000133018 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00033278 | lncRNA | upstream | 22346 | 35579580 ~ 35581291 (+) | True | XLOC_015619 |
| TCONS_00033605 | lncRNA | upstream | 22692 | 35517875 ~ 35580945 (+) | False | XLOC_015619 |
| TCONS_00031183 | lncRNA | upstream | 85208 | 35512002 ~ 35518429 (+) | False | XLOC_015619 |
| TCONS_00031181 | lncRNA | upstream | 100704 | 35482156 ~ 35502933 (+) | False | XLOC_015618 |
| TCONS_00031182 | lncRNA | upstream | 100704 | 35488415 ~ 35502933 (+) | False | XLOC_015618 |
| TCONS_00033606 | lncRNA | downstream | 6658 | 35612555 ~ 35614298 (+) | False | XLOC_015623 |
| TCONS_00033607 | lncRNA | downstream | 467056 | 36072953 ~ 36078638 (+) | True | XLOC_015631 |
| TCONS_00031209 | lncRNA | downstream | 487664 | 36093561 ~ 36094319 (+) | True | XLOC_015636 |
| TCONS_00033608 | lncRNA | downstream | 574346 | 36180243 ~ 36367124 (+) | False | XLOC_015702 |
| TCONS_00033609 | lncRNA | downstream | 574346 | 36180243 ~ 36583275 (+) | False | XLOC_015702 |
| TCONS_00031185 | mRNA | upstream | 2267 | 35595454 ~ 35601370 (+) | True | XLOC_015621 |
| TCONS_00031184 | mRNA | upstream | 9453 | 35591423 ~ 35594184 (+) | True | XLOC_015620 |
| TCONS_00031179 | mRNA | upstream | 129522 | 35240764 ~ 35474115 (+) | False | XLOC_015617 |
| TCONS_00031178 | mRNA | upstream | 130051 | 35240485 ~ 35473586 (+) | False | XLOC_015617 |
| TCONS_00031180 | mRNA | upstream | 172657 | 35421285 ~ 35430980 (+) | True | XLOC_015617 |
| TCONS_00031188 | mRNA | downstream | 6724 | 35612621 ~ 35614293 (+) | True | XLOC_015623 |
| TCONS_00031189 | mRNA | downstream | 9650 | 35615547 ~ 35731771 (+) | False | XLOC_015624 |
| TCONS_00031190 | mRNA | downstream | 122136 | 35728033 ~ 35731776 (+) | True | XLOC_015624 |
| TCONS_00031191 | mRNA | downstream | 126755 | 35732652 ~ 35850678 (+) | False | XLOC_015625 |
| TCONS_00031192 | mRNA | downstream | 127438 | 35733335 ~ 35851661 (+) | False | XLOC_015625 |
| TCONS_00031167 | other | upstream | 1670636 | 33927219 ~ 33933001 (+) | True | XLOC_015607 |
| TCONS_00031163 | other | upstream | 1701182 | 33902325 ~ 33902455 (+) | True | XLOC_015606 |
| TCONS_00031162 | other | upstream | 1703125 | 33900435 ~ 33900512 (+) | True | XLOC_015605 |
| TCONS_00031160 | other | upstream | 1846069 | 33756378 ~ 33757568 (+) | True | XLOC_015600 |
| TCONS_00031140 | other | upstream | 2403269 | 33189584 ~ 33200368 (+) | False | XLOC_015585 |
| TCONS_00031194 | other | downstream | 225432 | 35831329 ~ 35831445 (+) | True | XLOC_015626 |
| TCONS_00031197 | other | downstream | 385240 | 35991137 ~ 35998576 (+) | False | XLOC_015629 |
| TCONS_00031204 | other | downstream | 481872 | 36087769 ~ 36087779 (+) | True | XLOC_015632 |
| TCONS_00031205 | other | downstream | 482534 | 36088431 ~ 36088479 (+) | True | XLOC_015633 |
| TCONS_00031206 | other | downstream | 482761 | 36088658 ~ 36088717 (+) | True | XLOC_015634 |
