RNA id: TCONS_00031178


Basic Information

Item Value
RNA id TCONS_00031178
length 4749
RNA type mRNA
GC content 0.51
exon number 23
gene id XLOC_015617
representative False

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 35240485 ~ 35474115 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

taaatttaactgGCTTTTTATAtacagtgtgtgagagagactcaAAATCTCATCCTTttgtctccctctctctctctctctctctctctctctctctctctctctctctctctctctcgtctcTCAGAGCGGAGCCCAACTGAAGCTAGTGGGATTAGTTCTGGACCGGCTACTGTCGGCTATTGGAACACCCTCTAGAGGCTGCAGGAGGAGAATGCCAGCGCTGGAAGATCAATACAGTGAGAGAGCGAAAGAGAACAAGACAGGGGGTAGAGAGGCATAGGGAGGCTCGGGGAAGGAAAGAGAATGAAACAGGGGGTGTCGCTgcccgagagagagagagagagagacggataGAGCAAGAGACGGAGTTAGAGCGAGAGCAAGGTGCACACGTTGCTCAGCCTCCTCATTGCAGCCGCGACAGGCAGCCAGAGAGGAGCTCCAGTCGAACCCGTGGCAACAATAGACTACAGAAAACACAGCTTGACCAATCAATAGACCTCTGCCAGAAACATTGTGAGCCGGAGAGAGCTGCTCAAGGACCACGGAGGAGCAGATAAGGTGAAGGTCTGAGGCAATTACAGCGCCGCTTTCCAAAACTAGaAAACTACTGGGAAAATTCCAGAGCAGCAGACGTGCCAATCAGAGGTCTATTTGTGGAGTTGATGATCTCACCCTAGTGCCCGAGTTGTGATGTGGGGGTGCGCCATGGCAATACAAGGTTCAGTAGTGAGCCTGGCTCTACTGTTCTTCGGGATTCAAGCTGTTCCCAGCCCCACCAGCAAACTAGTGAGGACCACAAGGGTGAGGCGACAGGTTCCAGAGGGGGGCGATCCTGCTGACAACCAGATGCAGCCTATGGTCTTCAATCACGTATACAACATCAACGTACCTGTAGAGTCCCTCTGTTCAGTGGACCTAGATGCGGTGACAGGTCCAGAGACGAACAAAACAGCATCTGGGAGTGATAAGATGCCGACGGAGTACACAGAGGAAACAGTGGACTCGGACAGCCAGGTGACCTTCACCCATCGCATCAATATCCCAAAGCAGGCCTGTGCTTGTCCTTCAGCTACCACCATAGAGCAGCTGGCAAGCCGCATAGAGATGCTGGAGAGAGAGGTGTCGCTGCTTCGAACGCAGTGTAGCTCCAGCTGCTGCGGAGAGAGCTCTGTCATGGGTCGCCTAGACTTCGTCCCTCAGTGCGGCCATGgcacattcagtatggaggtttGCGGGTGTGTTTGTGAAGAAGGCTGGATTGGCAAGAACTGCACTGAGCCACGCTGCCCAGACGACTGCTCGGGCCAGGGCATTTGCATCGAAGGCGATTGTGTTTGCGACCGTAATTTCGGTGGTGAAAACTGCTCCGAGCCACGATGTCCAAGTGACTGCTCTGACAGGGGCTTGTGTATTGACGGGGAGTGTGTTTGTGAGGAGGCCTTCGCGGGGGAGGACTGCTCACTGGGCAGATGTCTAAACGACTGCTCGGATCAAGGGGCCTGTGTGAACGGAAGCTGCCAGTGCCGATCCGGCTTCCTGGGGGAAGACTGCTCGCTCATCTTCTGCGCTAATAACTGCAGCCAGAGAGGTGTGTGCAAGGAGGGCTTCTGCGTCTGTCAAGAGGGATACACAGGAGATGACTGCACTTCAGTTTTACCTCCAATGAATCTGCGAGTTCGGGGAGTGTCAGAAAACACCATTGATCTACAGTGGGAAGGCCCAGCGATCCTGACAGACTATCTCATCACTTATGCCCCCACAACTCCAGGCGGAGTCCAGCTAGAAATGAGAGTCCCGGGAAATGTTACCAACATCACCATCAAAGGTTTAAATCCGGGTCTGGAGTACAATGTCAACGTGTATGCAGTGATTGACAACATCATCAGCTCCCCAATGAACACCTTAGTCTCCACCTATCTCTCAAATCCAGACGGTTTACTCTTCAAATCCATCATGGAGACATCCGTGGAGGTTCAATGGCAACCCTTAGACTACTTGTTTGATGGTTGGGAAATAAGCTTCATTCCCAAGGACAATGATGGAGGGATGACAGCACAGCTACCCAGTACCATCACATCTTTCCACCAAACGGGACTGAAGCCTGGAGAAGAATACACTGTCAACCTGGTGGCCCTGAAAGACCAAGGCAGGAGCCTGCCTGTTACCGCAACTGTTACCACACTGATTGATGGGCCAATACAGCTTATTGTGCGAGACATCTCAGACACGGTTGCGTTTGTGGAGTGGAGCCCACCCAAGGCTAAAGTGGACCAGATTATACTGCGTTATGGGCTGGTAGGGGTAGAAGGGCCAAAAACCACCTTTCGCCTTCAGCCTACTCTGAGCCAGTACTCACTCCAAGTCCTGAGGCCGGGATCTACATATGAAGTATCAGTCAGTGGAGTCCGCAATGGCACTGAGAGTGGAGTTATTTCAACAGAATTCACAACAGAAATCGATGCGCCGAAGAACCTGAGAGTGCTGTCAAAAACTTCTATTAGCCTGGAGCTGGAATGGGACAATAGTGAGGCTGATGTTGAGGGTTACAGTGTGGTCTATAGCACACTTGCCGGTGATCAGTATGACAAAGTCATTGTCCCACGCAATGATGGTCCAAGCACTAAAACTACTCTCAATGAACTAATGCCTGGCACTGAGTATGGAATAGGAATTTCAGCTGTACTTGGTGCCAACCAAAGCACCCCAGCAACGATGAATGCCAGAACAGGTCTGGACGTCCCATTAGATTTGACTGTTACAGCCTCCACCGACAACACCATCACCCTTTTATGGGGCACAGTGCAGGGGCCTATTGATCACTATAGGGTGACTTACACATCATCCAGTGGAGTCACAACTGAGCTCACTGTGCCTAAAGACGTCACCACCACCACACTGACAAGCCTAGAGCCGGGCACCAAATACACAATCACTGTGGCAGCGCAACGAGGCAGGCAGCAGAGCACGGCGGCCACTATCGATGCCTTCACAGGGTTCCGCCCAATCACACAGCTCTTCTTCTCTGAGGTCTCCTCTGATTCATTGACTGTGGCGTGGAGTTCACCGGCTCCACCTGCTGACGCATTCATCTTGAACTACAGCGCTCAGGACTCCAGCGAGGATTCTGAGATTGCGCTTGATGGGTCGAAAACCAGAATCACCCTCACTGGTCTAATGCCATCCAGGCGCTACACTGTTACATTGGTCACCATGCATGGCAATGTGACTTCAAAGCCAGTTGTAGGCTCAGTCAACACAGgaatggaTCCTCCTAGAGACATCACTGTGCTGTATGTCACTGAAGAATCTGTAACCATAACATGGATTCAACCCCTCGCTCTCTTTGATTACTACAGAATGTCTTACCAATCATCTAAAGGAAGGATGGACAGTGTGGTGATTGACAACGACATTAATAACTATACCCTAACCAGCCTCCATCCAGCAACAGAGTATGAAATCAAGCTGAACGCAGTGAGAGGAAGCCAAGAGAGCAAGGTCATCACCACTACCGTATTCACAGCTATGGACATGCCAGCGGAGCTCACTGCACTGAACGTTACACCCCAAGGGGCTCTGCTGCGCTGGAACCCCCCAGCTTCCAGTGTTGATAACTACGTGCTCACTGTCACCCGGAACCAAGTTACAGCAGACACCTTCTTAGTGGAGGGTAACAAGCAGGAGTATCAGCTGAGTCAGCTCATCCCCAGCACCACCTACTCAGTGGCCCTTTATGCCACCAAAGGTCCTCTCACCAGCGGCACGGTCATCTCCAACTTTGTCACACCCATGGATGCTCCCCAGAACCTGACAGCTAGTGAGATTAACCATCGAAGTGCCCTCATATCCTGGCAGCCACCCATCGCAGACATCGACAATTACATGCTGACCTACAAAGCAGCGGATGGCAGTCGAAAGGAGCTGATCTTAGATGCGGAAGACACATGGATTCGTCTCGAGGGGCTGGCGGAGACCACCGAATATACTGTGAGACTGCAAGCCGCCAGAGGATTAGAAACCAGTGCTATTGTTTCTACATCTTTCACAACAGGAAACCGATTGTTTCCAACGCCACAGAACTGCGCGCAACACCTCCTAAACGGCGAGACTCTAGGTGGGATCTACACTATCTACGTCAACCGAGACCTCAGTCAAGGCGTGCAGGTTTACTGTGACATGACCACTGATGGAGGCGGCTGGATAGTGTTTCAGAGACGTCAAAACGGTTTGACGGATTTCTCCAGAAAGTGGACTGACTACAAGATCGGCTTCGGCAACCTGGAGGACGAATTCTGGCTCGGTTTGGACAACATTCATAAGATTGCAGCTCAAGGTCGTTACGAGCTTCGTATTGACATGAAGGATGGCCAGGAGTCTGTATACGCCAACTATGACAGGTTTTCCATTGGGGACTCCAAGAGCCTTTACAAACTGAGGATAGGAGAGTACAATGGCACCGCAGGAGATTCTTTGAGCTACCACCAGAGCCGACCTTTCTCTACCAAGGACAAAGACAATGACATTGCTGTCACCAACTGTGCACTGTCTTACAAGGGAGCCTGGTGGTACAAAAACTGTCATCGGGCAAACCTTAACGGCAAATACGGAGAGTCTAGACATAGTCAGGGTATAAACTGGTATCACTGGAAAGGCCATGAGTTTTCCATCCCTTTTGTGGAGATGAAGATGAGACCGTTCAACTACCGCAGCATCAGTGGCAAACGGAGGAGATCCACTCATTAA

Function

GO:

id name namespace
GO:0050767 regulation of neurogenesis biological_process
GO:0007411 axon guidance biological_process
GO:0007155 cell adhesion biological_process
GO:0062023 collagen-containing extracellular matrix cellular_component
GO:0005615 extracellular space cellular_component
GO:0005102 signaling receptor binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030804-1 Predicted to enable signaling receptor binding activity. Acts upstream of or within axon guidance. Predicted to be located in extracellular region. Predicted to be active in collagen-containing extracellular matrix and extracellular space. Is expressed in brain; diencephalon; head; optic tectum; and retinal outer plexiform layer. Orthologous to human TNR (tenascin R).

Ensembl:

ensembl_id ENSDART00000179804

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00033604 lncRNA upstream 24998 35146296 ~ 35215487 (+) True XLOC_015616
TCONS_00031177 lncRNA upstream 111337 35126080 ~ 35129148 (+) True XLOC_015615
TCONS_00031176 lncRNA upstream 121730 35117040 ~ 35118755 (+) False XLOC_015615
TCONS_00033276 lncRNA upstream 417601 34822568 ~ 34822884 (+) True XLOC_015614
TCONS_00033603 lncRNA upstream 761607 34477999 ~ 34478878 (+) True XLOC_015612
TCONS_00031181 lncRNA downstream 8570 35482156 ~ 35502933 (+) False XLOC_015618
TCONS_00031182 lncRNA downstream 14829 35488415 ~ 35502933 (+) False XLOC_015618
TCONS_00033277 lncRNA downstream 23112 35496698 ~ 35497033 (+) True XLOC_015618
TCONS_00031183 lncRNA downstream 38416 35512002 ~ 35518429 (+) False XLOC_015619
TCONS_00033605 lncRNA downstream 44289 35517875 ~ 35580945 (+) False XLOC_015619
TCONS_00031175 mRNA upstream 103268 35116627 ~ 35137217 (+) False XLOC_015615
TCONS_00031171 mRNA upstream 256230 34572690 ~ 34984255 (+) False XLOC_015613
TCONS_00031173 mRNA upstream 258095 34967022 ~ 34982390 (+) False XLOC_015613
TCONS_00031174 mRNA upstream 258395 34967210 ~ 34982090 (+) True XLOC_015613
TCONS_00031172 mRNA upstream 258468 34767171 ~ 34982017 (+) False XLOC_015613
TCONS_00031184 mRNA downstream 117837 35591423 ~ 35594184 (+) True XLOC_015620
TCONS_00031185 mRNA downstream 121868 35595454 ~ 35601370 (+) True XLOC_015621
TCONS_00031187 mRNA downstream 130051 35603637 ~ 35611789 (+) True XLOC_015622
TCONS_00031188 mRNA downstream 139035 35612621 ~ 35614293 (+) True XLOC_015623
TCONS_00031189 mRNA downstream 141961 35615547 ~ 35731771 (+) False XLOC_015624
TCONS_00031167 other upstream 1307484 33927219 ~ 33933001 (+) True XLOC_015607
TCONS_00031163 other upstream 1338030 33902325 ~ 33902455 (+) True XLOC_015606
TCONS_00031162 other upstream 1339973 33900435 ~ 33900512 (+) True XLOC_015605
TCONS_00031160 other upstream 1482917 33756378 ~ 33757568 (+) True XLOC_015600
TCONS_00031140 other upstream 2040117 33189584 ~ 33200368 (+) False XLOC_015585
TCONS_00031194 other downstream 357743 35831329 ~ 35831445 (+) True XLOC_015626
TCONS_00031197 other downstream 517551 35991137 ~ 35998576 (+) False XLOC_015629
TCONS_00031204 other downstream 614183 36087769 ~ 36087779 (+) True XLOC_015632
TCONS_00031205 other downstream 614845 36088431 ~ 36088479 (+) True XLOC_015633
TCONS_00031206 other downstream 615072 36088658 ~ 36088717 (+) True XLOC_015634

Expression Profile

//