XLOC_015705


Basic Information

Item Value
gene id XLOC_015705
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 36552692 ~ 36564473 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00033281
CAAAGCCCAAAGGAAGTTTTACAGAATCCAGTCAGATTGAAGCAAGACGCCAGAGCCGGAGTTTTGTACATCCATTTGCACAGTACTGTACAACAAGTTTCCTTTGCTGAGTTCCTTGGTCAGGGGTTAAACACATTTTCTGTCCAGTACTGCAGTTGGAATTTTCCATCAacatttttatgaCAACCGATGTCCATGTCAAAAGAGCGTCTATTCTTTAAGCTCTCTTTACTTACCTTGGTGAGGATGAGGCATGCCTGGTGAAAGAATACATGagCAACCAAAAAGAAGAATTTTTGAAGGACCTGACAAACACCACCATGGCCATATGTGTCATCAAAAAGGAAAGAGGAGATTATGAGGACATTGGCATCGTTGTGGATGGAACAGTGATTATTGAACAGATAAAATCTGTTGCACAAGCCTGTGCACTGATGTTGGGGGCAATTTATGTGCTTGATTTGGCCtacccaaaagaactcaaatacTATTTGGAGTTTGCCCAAAAAGTACTTGTGCAAATGAACTCTGACAAGCTCTCCTCAAAGGTTCTCATACTGGAAAACAGTGTGATACTGTAATTTTAAGCATTGAAGTGTTGATAAATGCTCAACAACCAAATGTATATCATATACAAATTGCAGTTTAGTGTAGGAATTGTTTAATAAGTGAATTCAGTTTTCTTTGTGTGCAAAATTAATTAGCTGTAGGAACTTGTtttaaatggtgtgtgtgtgtgtgcgcgtgtgtgtgcgtgcgtgcgtgcgtgcgtgtgtgtgtgtgtgtgtgtgtgagagagagagagagagagagcatgtgcaTTCTATAAACTGTATTTATTCCATTTCATACAACTTGTACTTGCTCAATATGTTGagttaattttttaagttaattagtTGATTATTTTGTGTATTGGGGTGTGTGTATCATAAGTATTGCAGTTTGCTCTAAGACTTCATATAGTTTTCTTTTATGTgttggtttaaattaaatgtgctgtacaaactgtttattgttttatggtGTGCTGCTAAAGCATTTATAGGCAgtgatttatgttttgttaaaaaatgcatcttaaaaagtcattaaaatgaattcaaaacaAATGTGGTCAAATGTCATTTCAAAGTGTATTTGCAAGCAgtttaatgttcattttagacatcaaaaataaatagatgTAAG

Function

GO:

id name namespace
GO:0007178 transmembrane receptor protein serine/threonine kinase signaling pathway biological_process
GO:0001704 formation of primary germ layer biological_process
GO:0048729 tissue morphogenesis biological_process
GO:0001706 endoderm formation biological_process
GO:0019219 regulation of nucleobase-containing compound metabolic process biological_process
GO:0001711 endodermal cell fate commitment biological_process
GO:0019222 regulation of metabolic process biological_process
GO:0001714 endodermal cell fate specification biological_process
GO:0016070 RNA metabolic process biological_process
GO:0007492 endoderm development biological_process
GO:0080090 regulation of primary metabolic process biological_process
GO:0018130 heterocycle biosynthetic process biological_process
GO:0006351 transcription, DNA-templated biological_process
GO:0065007 biological regulation biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0051171 regulation of nitrogen compound metabolic process biological_process
GO:0006366 transcription by RNA polymerase II biological_process
GO:0036342 post-anal tail morphogenesis biological_process
GO:0003401 axis elongation biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0009888 tissue development biological_process
GO:0009889 regulation of biosynthetic process biological_process
GO:0097659 nucleic acid-templated transcription biological_process
GO:0031323 regulation of cellular metabolic process biological_process
GO:0060429 epithelium development biological_process
GO:0031326 regulation of cellular biosynthetic process biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0090092 regulation of transmembrane receptor protein serine/threonine kinase signaling pathway biological_process
GO:1903224 regulation of endodermal cell differentiation biological_process
GO:0009653 anatomical structure morphogenesis biological_process
GO:0051252 regulation of RNA metabolic process biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:1903506 regulation of nucleic acid-templated transcription biological_process
GO:1901362 organic cyclic compound biosynthetic process biological_process
GO:0010467 gene expression biological_process
GO:0010468 regulation of gene expression biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0009966 regulation of signal transduction biological_process
GO:0060255 regulation of macromolecule metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0003002 regionalization biological_process
GO:0050789 regulation of biological process biological_process
GO:0050794 regulation of cellular process biological_process
GO:0006807 nitrogen compound metabolic process biological_process
GO:2001141 regulation of RNA biosynthetic process biological_process
GO:0032774 RNA biosynthetic process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0019438 aromatic compound biosynthetic process biological_process
GO:0010556 regulation of macromolecule biosynthetic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0060028 convergent extension involved in axis elongation biological_process
GO:0034654 nucleobase-containing compound biosynthetic process biological_process
GO:0035987 endodermal cell differentiation biological_process
GO:2000112 regulation of cellular macromolecule biosynthetic process biological_process
GO:0042659 regulation of cell fate specification biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:0042663 regulation of endodermal cell fate specification biological_process
GO:0009790 embryo development biological_process
GO:0005634 nucleus cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003690 double-stranded DNA binding molecular_function
GO:0097159 organic cyclic compound binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function
GO:1901363 heterocyclic compound binding molecular_function
GO:0140110 transcription regulator activity molecular_function
GO:0001067 regulatory region nucleic acid binding molecular_function
GO:1990837 sequence-specific double-stranded DNA binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00033281 True 1191 lncRNA 0.36 4 36552692 36564473

Neighbor

gene id symbol gene type direction distance location
XLOC_015704 NA coding upstream 81582 36379239 ~ 36471110 (+)
XLOC_015703 NA coding upstream 305223 36244922 ~ 36247469 (+)
XLOC_015701 traj60 coding upstream 427875 36124755 ~ 36124817 (+)
XLOC_015700 traj59 coding upstream 428410 36124223 ~ 36124282 (+)
XLOC_015699 traj58 coding upstream 428761 36123871 ~ 36123931 (+)
XLOC_015706 ing5b coding downstream 41546 36606019 ~ 36636866 (+)
XLOC_015707 NA coding downstream 74458 36638931 ~ 36642762 (+)
XLOC_015708 klhl6 coding downstream 81978 36646451 ~ 36659156 (+)
XLOC_015709 ptx3b coding downstream 127298 36691771 ~ 36695144 (+)
XLOC_015710 golim4b coding downstream 136849 36701322 ~ 36721289 (+)
XLOC_015685 BX681417.1 non-coding upstream 435236 36117394 ~ 36117456 (+)
XLOC_015646 BX681417.3 non-coding upstream 453664 36098969 ~ 36099028 (+)
XLOC_015636 BX681417.2 non-coding upstream 458373 36092953 ~ 36094319 (+)
XLOC_015712 NA non-coding downstream 177870 36742343 ~ 36743912 (+)
XLOC_015713 dre-mir-2198 non-coding downstream 189176 36753649 ~ 36753758 (+)
XLOC_015725 NA non-coding downstream 736935 37301408 ~ 37307571 (+)
XLOC_015733 NA non-coding downstream 1262261 37826734 ~ 37827039 (+)

Expression


Co-expression Network