XLOC_015933 (crygn1)


Basic Information

Item Value
gene id XLOC_015933
gene name crygn1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 51783120 ~ 51815413 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00031606
TTTTGCCCTAAATATGTTATAAACTAATCCAAATAAGATTTTTGTTCTGAAACAAATCTAAATGCTAAGTGCGCCACACGCTGTTTACTACCGGAATTTCAATTAGCAGACAACGACGTCACCGCTTGAAGCAAATCCTTTCACCTCATGACGATAGTGTTCTTTGAGGGGAAATGCTTCACCGGTAGGAGGCTGGAGGTGTTTGGAGACTGTGATAACTTCCAGGACCGTGGCTTTATGAACAGGGTGAACTCCATCCGCGTGGAGAGCGGCGCTTGGGTGTGTTTCGACCATCCTGATTTTAAGGGGCAGCAGTACATGCTGGAAAAAGGAGAGTATCCTGATTTCCAGCGCTGGAACGGCCACAATGACCACATGGGCTCCTGTAAGCCAATCAAAATGCATGGTGAGCAGTACAGGATGGAGCTCTTCGAGGGCCAGAATTTCACCGGTCAGTGTGTTGAGCTGTGTGACGACTGTCCTTTCCTACAGAGCACTGGATTCAGCAAGAACTGCCTCAACTCCATCAAAGTCTATGGAGACGGAGCCTGGGCCATGTACGAAGAACCAAACTATCGTGGCCGCATGTACATTGTGGAAAGAGGAAACTACTGCGCATTTACGGAGTGGCAGTCCGAAAATCCCAACATCCAGTCGATCCGCAGAGTGGTGAACTATTTCTAATCCTCTCCATCCCAAAACTGCCTCGCACCTAAAGGATAACCAGCAAGAAATTCAGCAAGTGTATTGATTCCAAATAAATCGGAGcttttggtttattttaataattcacgCAGATATGTTCTTTTTATTTATGGAATTTCATCTATGAATCGGTTATTCAAAAGAAAATGCAATTAGCGCAGAAATACtcttgtatgttttattttgtctttgtataCAGAGGCAATGAGCTGAAATAAAGGTCAATTGTGAAATACTTGCTGTATTCTTACACTTTACTTTTCAAAatagaattttaaaaacaaaaaattcagcaaaaactgaataaaaataaaaaagc
>TCONS_00031607
ATTCCAGTGGATAGTTGCAGGATCAAGGCAGGGAACATGTCGCAGTATTCAGGGAAGATAGTGTTCTTTGAGGGGAAATGCTTCACCGGTAGGAGGCTGGAGGTGTTTGGAGACTGTGATAACTTCCAGGACCGTGGCTTTATGAACAGGGTGAACTCCATCCGCGTGGAGAGCGGCGCTTGGGTGTGTTTCGACCATCCTGATTTTAAGGGGCAGCAGTACATGCTGGAAAAAGGAGAGTATCCTGATTTCCAGCGCTGGAACGGCCACAATGACCACATGGGCTCCTGTAAGCCAATCAAAATGCATGGTGAGCAGTACAGGATGGAGCTCTTCGAGGGCCAGAATTTCACCGGTCAGTGTGTTGAGCTGTGTGACGACTGTCCTTTCCTACAGAGCACTGGATTCAGCAAGAACTGCCTCAACTCCATCAAAGTCTATGGAGACGGAGCCTGGGCCATGTACGAAGAACCAAACTATCGTGGCCGCATGTACATTGTGGAAAGAGGAAACTACTGCGCATTTACGGAGTGGCAGTCCGAAAATCCCAACATCCAGTCGATCCGCAGAGTGGTGAACTATTTCTAATCCTCTCCATCCCAAAACTGCCTCGCACCTAAAGGATAACCAGCAAGAAATTCAGCAAGTGTATTGATTCCAAATAAATCGGAGcttttggtttattttaataattcacgCAGATATGTTCTTTTTATTTATGGAATTTCATCTATGAATCGGTTATTCAAAAGAAAATGCAATTAGCGCAGAAATACtcttgtatgttttattttgtctttgtataCAGAGGCAATGAGCTGAAATAAAGGTCAATTGTG

Function

symbol description
crygn1 Predicted to be a structural constituent of eye lens. Predicted to be involved in lens development in camera-type eye and visual perception. Is expressed in lens. Orthologous to human CRYGN (crystallin gamma N).

GO:

id name namespace
GO:0002088 lens development in camera-type eye biological_process
GO:0007601 visual perception biological_process
GO:0005575 cellular_component cellular_component
GO:0005212 structural constituent of eye lens molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050225-1 Predicted to be a structural constituent of eye lens. Predicted to be involved in lens development in camera-type eye and visual perception. Is expressed in lens. Orthologous to human CRYGN (crystallin gamma N).

Ensembl:

ensembl_id ENSDARG00000102129

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00031606 False 1024 mRNA 0.42 4 51783120 51815413
TCONS_00031607 True 839 mRNA 0.46 4 51796441 51815324

Neighbor

gene id symbol gene type direction distance location
XLOC_015932 NA coding upstream 17098 51752457 ~ 51766022 (+)
XLOC_015931 abhd4 coding upstream 126013 51645164 ~ 51657107 (+)
XLOC_015929 NA coding upstream 189542 51477657 ~ 51593578 (+)
XLOC_015930 NA coding upstream 213090 51568650 ~ 51570030 (+)
XLOC_015928 NA coding upstream 375994 51398555 ~ 51407126 (+)
XLOC_015934 acvr2bb coding downstream 2626 51818039 ~ 51854668 (+)
XLOC_015935 NA coding downstream 126213 51941626 ~ 51949728 (+)
XLOC_015936 yju2 coding downstream 233826 52049239 ~ 52063440 (+)
XLOC_015937 shda coding downstream 250471 52065884 ~ 52093505 (+)
XLOC_015938 NA coding downstream 287042 52102455 ~ 52102984 (+)
XLOC_015926 BX255896.1 non-coding upstream 704037 51071699 ~ 51079083 (+)
XLOC_015940 NA non-coding downstream 338982 52154395 ~ 52202451 (+)
XLOC_015942 NA non-coding downstream 756909 52572322 ~ 52599189 (+)
XLOC_015946 NA non-coding downstream 1519365 53334778 ~ 53338223 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G287513 NA non-coding CI01000073 null 104821 ~ 108045 (-)