XLOC_015936 (yju2)


Basic Information

Item Value
gene id XLOC_015936
gene name yju2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 52049239 ~ 52063440 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00031609
ATGCCATCGTTCTGCCGGTGGTGGCAGCACTGCAGCTCGAAAGTGACCGATACACACAGTCGAGGAAGAAACCTCCAGATCAGTGTGCTAACACGCATTTGAGCATTAACTTATCTTCTTAGTTTAAGTTTTACTCAGTTAAAGAGAACCATGTCGGAAAGAAAAGTTTTAAATAAATACTATCCCCCGGATTTTGATCCGTCTAAAATCCCTAAACTTAAACTTCCCAAAGACCGTCAGTATGTGGTCAGATTGATGGCACCGTTCAATATGAGGTGTAAAACATGTGGCGAGTACATTTACAAAGGCAAGAAGTTCAACGCTCGTAAGGAGACCGTTCAGAATGAGCTCTACCTGGGGCTTCCCATCTTCAGATTTTACATTAAATGCACCAGATGCTTGGCTGAGATCACGTTTAAGACAGATCCGGAAAACACAGACTATGCCATGGAGCACGGGGCAACACGCAACTTTCAGGCTGAGAAACTGAtcgaggaggaggagaagaagatCCAGCAGGAGCGAGAGGATGAGGAACTCAATAACCCCATGAAGGTCCTGGAGAACCGCACACGGGACTCAAAGCTGGAGATGGAGGTACTGGAGAACCTGCAGGAGCTGAAGGAGCTGAACCAGAGGCAGGCGCAAGTGGACTTTGAGGGTATGCTGGGTCAATATAAAGAGCTGGAGCAGAGACAGAAGCAGAGAGAGCAGGAGGAAGACGAGCAAGAGACCAAAGAGATGTTGGAGAGAGCTCTGGTCAAAAGACTGAGGGACTCAGACTCTGAAGAAGAGGCAGAAAACGCAAAGGAGCGAAGCAAGAAGCATATAGCTGATAAACCCACAGACATCCTCACCACAGACACCAGCACTTCATCAcagGGCTTGTCGTCTGCAGTGGCGAAGAAACAGAGCTGGGATAGGAGTGTGGGAGGTCTGAGTGTGAAGGGAGCTCTGGGGTCTCTGGTGGTGAGGAAGAAGCCAGCAGATTCTGCCTCTAAACCTTCCCATGCTGCACCACCAccggctgctgctgctgctggcacACAAACAGGTGCTGTCAAACCCGAGTCTTCCATAACATCATCATCTGCTTCTTCAAACATACAGCCGGTATCATGTCAGAACGGTTCGTCTCTCGGCCTCTTGGGGGCGTATTCAGACAGCGACGACAGCAGCTCAGACTAGCCCAGGACACAAAAAACAATGCATTTCAGATCACTGGAATTAAATGCTTGTTTTCAGACCACCATAAATGACACAAAACACTTGAAATTTCCTTAACTTGGACTCTTTAAAAGCATAATTGAGAGTGCAGGTCAATAGATTTTTAGTATTCagtgatgactttttttttttagctgtgggACATATCGTCTACGAGAAGCCATATCCATTGGCTGGCTTTCATTCAGTCTATTAGATCTGCTCCATGCCAGTGTCTCTAATGTACTCTATAATGCATTTCTAATCTATTATGCACTCTATAATGTAGTATTTTTCCCTCCATGTTAGTTCAGTCAATATGAGGAAATGCATTTGAGGGTTACAGAGGAAATAAATCTAATTTAGCGTGATCATCTCTAATCCTGTGTTGTAAAAgacctcttttttttctctccagcATCCAACAAATAAATAGCAAGTCATGTTTTGTTTCAAA
>TCONS_00031610
GTGCTAACACGCATTTGAGCATTAACTTATCTTCTTAGTTTAAGTTTTACTCAGTTAAAGAGAACCATGTCGGAAAGAAAAGTTTTAAATAAATACTATCCCCCGGATTTTGATCCGTCTAAAATCCCTAAACTTAAACTTCCCAAAGACCGTCAGTATGTGGTCAGATTGATGGCACCGTTCAATATGAGGTGAGACGATTTATGTGAATGTATGCATATATGTTGAAGTCTGTTTTACAGTATATTCGTtcagtgacagcttgtgacatgcTCCTTAATGTTTaacatggtactttgaatattcggtctgaaatctcATGCAAGTATGACGTGATAACAACATTAGCAATATTATTAGTGTGTGTATTAATATTTCAATACACTcacggtcactttattaggtacaccttaatagtaccaGGTTAGACCCCGTTGAGAACTGCCTTCGTgtcataaattcaacaaggtactgaaaatattcctcagagattttggtccatattgacatgatagcatcacacagctgcagatttgtcggctgcacatccatgatgccaatctccttccaccacatcccgaaggtgctctattggattaagatctggtgattgtgga

Function

symbol description
yju2 Predicted to enable metal ion binding activity. Acts upstream of or within negative regulation of DNA damage response, signal transduction by p53 class mediator and negative regulation of neuron apoptotic process. Predicted to be located in nucleus. Predicted to be part of U2-type catalytic step 1 spliceosome. Orthologous to human YJU2 (YJU2 splicing factor homolog).

GO:

id name namespace
GO:0006397 mRNA processing biological_process
GO:0043518 negative regulation of DNA damage response, signal transduction by p53 class mediator biological_process
GO:0043524 negative regulation of neuron apoptotic process biological_process
GO:0008380 RNA splicing biological_process
GO:0005634 nucleus cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0071006 U2-type catalytic step 1 spliceosome cellular_component
GO:0046872 metal ion binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-841 Predicted to enable metal ion binding activity. Acts upstream of or within negative regulation of DNA damage response, signal transduction by p53 class mediator and negative regulation of neuron apoptotic process. Predicted to be located in nucleus. Predicted to be part of U2-type catalytic step 1 spliceosome. Orthologous to human YJU2 (YJU2 splicing factor homolog).

Ensembl:

ensembl_id ENSDARG00000026185

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00031609 False 1663 mRNA 0.45 8 52049239 52063440
TCONS_00031610 True 617 lncRNA 0.38 2 52049323 52050288

Neighbor

gene id symbol gene type direction distance location
XLOC_015935 NA coding upstream 99511 51941626 ~ 51949728 (+)
XLOC_015934 acvr2bb coding upstream 194571 51818039 ~ 51854668 (+)
XLOC_015933 crygn1 coding upstream 233826 51783120 ~ 51815413 (+)
XLOC_015932 NA coding upstream 283217 51752457 ~ 51766022 (+)
XLOC_015931 abhd4 coding upstream 392132 51645164 ~ 51657107 (+)
XLOC_015937 shda coding downstream 2444 52065884 ~ 52093505 (+)
XLOC_015938 NA coding downstream 39015 52102455 ~ 52102984 (+)
XLOC_015939 theg coding downstream 59223 52122663 ~ 52139696 (+)
XLOC_015940 NA coding downstream 90955 52154395 ~ 52202451 (+)
XLOC_015941 plpp2a coding downstream 169190 52232630 ~ 52306803 (+)
XLOC_015929 NA non-coding upstream 455661 51477657 ~ 51593578 (+)
XLOC_015930 NA non-coding upstream 479209 51568650 ~ 51570030 (+)
XLOC_015928 NA non-coding upstream 642113 51398555 ~ 51407126 (+)
XLOC_015942 NA non-coding downstream 508882 52572322 ~ 52599189 (+)
XLOC_015946 NA non-coding downstream 1271338 53334778 ~ 53338223 (+)
XLOC_015948 NA non-coding downstream 1380257 53443697 ~ 53461828 (+)

Expression


Co-expression Network