XLOC_015946


Basic Information

Item Value
gene id XLOC_015946
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 53334778 ~ 53338223 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00033694
GAGATCAGGTGTCAAAACACTACATAGCTGTCAGTCCACGGAAAATACGTCATCCACGTGGATGCTCAAACTTGACACATGCTCGGGATATTGCtgttattctgtttaaaatttgtatttatacatAGAATTCCCATGCAATAACTATTCATGATTATGAGTTAACTCGCTATTAATCACATGACAACTATTAGTTAACATGAGCTAACTTTGATTAATCGCATTGCGGCCATGAGTTAACACGCAATTAATCACATGACAGCCATCAGTTAACCTGTGATTAATCATATGATGGCCATGAGTTAACACACGATTAATCACATGACAGCCATGAGTTAACTTGTGATTAATCATATGATGGCCATGAGTTAACACACGATTAATCACATGACAGCCATGAGTTAACTTGTGATTAATCATATGATAGCCTTGAATTAACACACAATTAATCACATGCCAACCATGAGTTAACTCGCGATTATCCGTGTGCCAACCATTAGTTAACTTGCTATTAATTGCACAGTGGTCATGAGTTATTTCACAGTAAATCGAATGACAGCCATGAGTTAACTCACAATTAATCACAAGACTTTAAAGAGTTGTGATTAATGAGTTGATGACTTGTGATTAATCACATGGTGGTCATGGTTTAACTTGCGATTAAATGTATGGCAGCCATGGGTTTTTAACTCACAATAAATCACATGACACTATTAGTTAACTCACGATTAATCGCAAGGCATCGATTAGTTGACTTGTAATTAATCACATGACGGCCATGGTTTAACTTGCGACTAATTGTGTGGCAGCTGTGGGTTTTAACTCACAATTAATCACATGACACAATGAGTTATCTACCGATTAATCACATGATAACATTAGTTAACTTGTA

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00033694 True 892 lncRNA 0.36 2 53334778 53338223

Neighbor

gene id symbol gene type direction distance location
XLOC_015945 zgc:165603 coding upstream 96309 53204750 ~ 53238469 (+)
XLOC_015944 si:ch211-182e10.4 coding upstream 211980 53114476 ~ 53122798 (+)
XLOC_015943 creb3l3b coding upstream 430013 52847049 ~ 52904765 (+)
XLOC_015942 NA coding upstream 735589 52572322 ~ 52599189 (+)
XLOC_015941 plpp2a coding upstream 1027975 52232630 ~ 52306803 (+)
XLOC_015947 celf5b coding downstream 19730 53357953 ~ 53426522 (+)
XLOC_015948 NA coding downstream 105474 53443697 ~ 53461828 (+)
XLOC_015949 NA coding downstream 241026 53579249 ~ 53580772 (+)
XLOC_015950 ranbp3b coding downstream 281045 53619268 ~ 53677508 (+)
XLOC_015951 CU861888.1 coding downstream 347848 53686071 ~ 53686188 (+)
XLOC_015940 NA non-coding upstream 1132327 52154395 ~ 52202451 (+)
XLOC_015938 NA non-coding upstream 1231794 52102455 ~ 52102984 (+)
XLOC_015935 NA non-coding upstream 1385050 51941626 ~ 51949728 (+)
XLOC_015932 NA non-coding upstream 1568756 51752457 ~ 51766022 (+)
XLOC_015954 NA non-coding downstream 704555 54042778 ~ 54043791 (+)
XLOC_015955 NA non-coding downstream 747670 54085893 ~ 54270366 (+)

Expression


Co-expression Network