XLOC_015943 (creb3l3b)


Basic Information

Item Value
gene id XLOC_015943
gene name creb3l3b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 52847049 ~ 52904765 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00031616
AGAACACACTGAGGAACACCACTGCACTAGCAGACACCATTTCCCTCTGTGGATCTTTTACCGCTGATTGTTTCTCCATAGCCCGAACATGGCACTTCTTTCAGACAAGTGTTTTCCCGGGCCTGAACTCCTGGAGCTGCTGCTGGAGCCTCATAGAGTCCCTGATACAGCCAGAGATGCAAAACATGGCAGTCCTGCATGGTCAATGGCAGATCAAAGCATTGCATGTCATGAAGGTGTTATGGATGATTTTCTGGACTCACTGTTGGACATGTCGAAGCCGTGCTCTCCATGTGACAGCGGCATCAGCGATGACAGCCCGTCTGAATGCCTGGACAGTCCACCGCCATCCGCAAGCTCAGCGTTCAGCTCCGTCTTCCTCCATCAGCCTCTTCCTCAGCAGGACACAAACACAGAGCCGGATTTCTCCATTGATCTGGcagatTGGGAGGCCTGCCTGTTTTCCGACAGTCTGACAGACCCTCAGTTCCCATCAGCAGTAGTGAAAAGTCAACCGGCAGCAGTTTACCAGCTCACAGTCAAAGACCTGCTGCTCTCCAGCACTGCGGAACCTTCAACAAAACCCTCCACCCAACAATCTCAGCATCTGATTCTCAATGACGATGAGAAGAAACTCTTAGCCAAAGAAGGAGTGAGTCTTCCCAGCCAACTGCCTCTTAACAAGTATGAAGAAAAGGTTTTGAAGAAGATTCGGAGGAAAATCAGAAACAAGCAGTCGGCACAGGAGAGCCGCAAGAAAAAGAAGGAGTATATAGATGGACTGGAGGGCAGGATGGCAGCCTGCAGCGCTCACAATCTGGATTTGCAGAGGAAAGTCCTCCAGCTAGAAAAAACCAACACgtCTCTGATGGAGCAGCTGAGGCGACTGCAGGCTCTGTTGATGAGCGGCTCCGGTAAACCTGCACAGACTGGGACCTGCATACTGGTGCtggttctctctttctctcttattCTCATCCCGAGTCTTCAACCCATCTCACACCGGAGGGCCGCAGACCCCGGGGACATCAGCACTGCCAAAGTTCAATCCAGGTCCCTGCGCTCCGTGATGGAAGTCTACAGCATCAGCAGGGGTGTGGACACGTCCTCGTCCAATCAAAACGCGCTTCTTACCAGGCCCGAGTACGCAGACATGGACCAGTCACATCACAACCACAGCTACCGAAAGCATCGTCGCGGAGACCCCATCACTGGACACAGCTGGACAACACACCGCGAACAAGACAGAAAGTGACTTGTGGATATTATACCAAGCTTCTAAATATGCAGATCTTTCCAGATGCAAAACAACCGGCTAAAGCTTGCGTGTTGCATTTTTACGTAGCTGTGGGGTTATCTGAATGGATTCTACCACAAAACCTGATGGGAATGGTATAAATATATACTGATGCCACAGCTTGCAGTATGCAAACgttgtgcgcacacacacacacaaacacacacacacacacacacacacacacacacacacacacacacacacaaacacaaaagcatGCAAATGTTGCACAAAAAGATGCTTAAGTTTATGATGTACCTTAAACACTTcgagctctattttaacgatcaaGCCGCaaaggtctaacagggttgagcttattctcttaatgagttattggtgtgttttgagcataacgtgcattaaaccagtcTCATCTcgcattccctttaagagtcagttgtgtcgcgccatggcgcatttgctatttacatggcggactttgtaagtggaaaaactgaagctTTACTAGGgacaaaacagttaaacagaccatctgcagcgcaaggataaagaactagcctcctccattcggcctctttactttctctttacttctttactttgg

Function

symbol description
creb3l3b Predicted to enable DNA-binding transcription factor activity and cAMP response element binding activity. Predicted to act upstream of or within endoplasmic reticulum unfolded protein response and positive regulation of transcription by RNA polymerase II. Predicted to be located in endoplasmic reticulum membrane and nucleus. Predicted to be integral component of membrane. Orthologous to human CREB3L3 (cAMP responsive element binding protein 3 like 3).

GO:

id name namespace
GO:0030968 endoplasmic reticulum unfolded protein response biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0045944 positive regulation of transcription by RNA polymerase II biological_process
GO:0035497 cAMP response element binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-131023-1 Predicted to enable DNA-binding transcription factor activity and cAMP response element binding activity. Predicted to act upstream of or within endoplasmic reticulum unfolded protein response and positive regulation of transcription by RNA polymerase II. Predicted to be located in endoplasmic reticulum membrane and nucleus. Predicted to be integral component of membrane. Orthologous to human CREB3L3 (cAMP responsive element binding protein 3 like 3).

Ensembl:

ensembl_id ENSDARG00000090903

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00031616 True 1868 mRNA 0.49 10 52847049 52904765

Neighbor

gene id symbol gene type direction distance location
XLOC_015942 NA coding upstream 247860 52572322 ~ 52599189 (+)
XLOC_015941 plpp2a coding upstream 540246 52232630 ~ 52306803 (+)
XLOC_015940 NA coding upstream 644598 52154395 ~ 52202451 (+)
XLOC_015939 theg coding upstream 707353 52122663 ~ 52139696 (+)
XLOC_015938 NA coding upstream 744065 52102455 ~ 52102984 (+)
XLOC_015944 si:ch211-182e10.4 coding downstream 209711 53114476 ~ 53122798 (+)
XLOC_015945 zgc:165603 coding downstream 299985 53204750 ~ 53238469 (+)
XLOC_015946 NA coding downstream 430013 53334778 ~ 53338223 (+)
XLOC_015947 celf5b coding downstream 453188 53357953 ~ 53426522 (+)
XLOC_015948 NA coding downstream 538932 53443697 ~ 53461828 (+)
XLOC_015935 NA non-coding upstream 897321 51941626 ~ 51949728 (+)
XLOC_015932 NA non-coding upstream 1081027 51752457 ~ 51766022 (+)
XLOC_015949 NA non-coding downstream 674484 53579249 ~ 53580772 (+)
XLOC_015951 CU861888.1 non-coding downstream 781306 53686071 ~ 53686188 (+)
XLOC_015954 NA non-coding downstream 1138013 54042778 ~ 54043791 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000074_00592687_00613605 NA coding CI01000074 null 592687 ~ 613936 (+)