XLOC_015947 (celf5b)


Basic Information

Item Value
gene id XLOC_015947
gene name celf5b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 53357953 ~ 53426522 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00031619
ATGTGCAGCCTTTACTGTTTCCATCAGAagtataaagtgtgtgtatatgtgtgtgtgtgtgcgcAATTAGGTCAATACAGTACCGTTTAtattgtggttgtgtgtttgtgtatttcagAGGACCGGAAGCTGTTTGTGGGCATGCTGAATAAGCAGCAGACTGAAGAGGATGTGTACCGTCTCTTCGAGCCCTACGGAGTCATCGAGGAGTGCACCGTATTACGAGGCCCTGATGGAAACAGTAAAGgtTGTGCCTTTGTAAAGTTTTCGACACACACTGAGGCTCAGTCTGCCATCGGCGGCCTTCACGGCAGTCAGACCATGCCTGGCGCATCGTCGAGTCTGGTGGTGAAGTTCGCTGACACTGATAAAGAGAGGACGATCCGCCGTATGCAGCAGATGGTGGGTCAGTTCGGGATCTTCAACCCCAGTGTGGCCCTGCCGTTCAGCACCTACAGCAGCACCTACAGCACCTACACACACGCGcTGATGCAGCAGCAGGCGGCGATCATGGCCGCGTCTCACGGCGGTTATTTAGCGCCTAGTGTTGCGTTTCCAGCCACACAGATCCACCAAGTGGGGGCGCTGAACATGAATGGCCTGCCGCCCACCCCGATGACCCCTGTTTCAGGTCATTTCTTTATTTTATCGTCCGCAGGTTTGAGCTCTCCTCCGGCTAATCTGGCTTCCTCCGCCGTGCCAAGCATCGTGACCCCAATAGTGAACGGATTCAGCGGGATCCCGCACCAACCCAATGGTCATCCGGTGGAGGCGGTTTACACCAATGGGTTGCCGCCGTACTCGACCCAGAGCCCAACCGCAGCCGACACGCTCCAGCAAGCATTCACTGGCGTCCAGCAATACACAGCCATATATCCTGCCACAACACTGACCCCTATAGGCCAGACACTGCCACAGCCTGCGCAGATCATccagcagcaacagcagcagcagagagAAGGTCCTGAAGGCTGCAACCTGTTCATTTATCACCTGCCGCAGGAGTTTGGTGATAATGAGCTCATGCAGATGTTTCTTCCATTCGGATCTGTCATCTCGTCAAAGGTGTTCATGGACAGAGCCACCAATCAGAGCAAGTGTTTCGGATTCGTGAGTTTCGATAACCCCGCCAGCGCTCAGGCTGCCATCCAGGCCATGAACGGCTTCCAGATCGGCATGAAGCGCTTGAAAGTGCAGCTGAAGCGGCCGAAAGACGCCAGCCGCCCGTACTGA
>TCONS_00031620
GACCGGAAGCTGTTTGTGGGCATGCTGAATAAGCAGCAGACTGAAGAGGATGTGTACCGTCTCTTCGAGCCCTACGGAGTCATCGAGGAGTGCACCGTATTACGAGGCCCTGATGGAAACAGTAAAGgtTGTGCCTTTGTAAAGTTTTCGACACACACTGAGGCTCAGTCTGCCATCGGCGGCCTTCACGGCAGTCAGACCATGCCTGGCGCATCGTCGAGTCTGGTGGTGAAGTTCGCTGACACTGATAAAGAGAGGACGATCCGCCGTATGCAGCAGATGGTGGGTCAGTTCGGGATCTTCAACCCCAGTGTGGCCCTGCCGTTCAGCACCTACAGCAGCACCTACAGCACCTACACACACGCGcTGATGCAGCAGCAGGCGGCGATCATGGCCGCGTCTCACGGCGGTTATTTAGCGCCTAGTGTTGCGTTTCCAGCCACACAGATCCACCAAGTGGGGGCGCTGAACATGAATGGCCTGCCGCCCACCCCGATGACCCCTGTTTCAG

Function

symbol description
celf5b Predicted to enable mRNA binding activity. Predicted to be involved in mRNA splice site selection and regulation of alternative mRNA splicing, via spliceosome. Predicted to be part of ribonucleoprotein complex. Predicted to be active in cytoplasm and nucleus. Orthologous to human CELF5 (CUGBP Elav-like family member 5).

GO:

id name namespace
GO:0006376 mRNA splice site selection biological_process
GO:0000381 regulation of alternative mRNA splicing, via spliceosome biological_process
GO:1990904 ribonucleoprotein complex cellular_component
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0003676 nucleic acid binding molecular_function
GO:0003723 RNA binding molecular_function
GO:0003729 mRNA binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070912-150 Predicted to enable mRNA binding activity. Predicted to be involved in mRNA splice site selection and regulation of alternative mRNA splicing, via spliceosome. Predicted to be part of ribonucleoprotein complex. Predicted to be active in cytoplasm and nucleus. Orthologous to human CELF5 (CUGBP Elav-like family member 5).

Ensembl:

ensembl_id ENSDARG00000090727

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00031619 False 1233 mRNA 0.55 9 53357953 53426522
TCONS_00031620 True 511 mRNA 0.57 4 53359234 53395300

Neighbor

gene id symbol gene type direction distance location
XLOC_015946 NA coding upstream 19730 53334778 ~ 53338223 (+)
XLOC_015945 zgc:165603 coding upstream 119484 53204750 ~ 53238469 (+)
XLOC_015944 si:ch211-182e10.4 coding upstream 235155 53114476 ~ 53122798 (+)
XLOC_015943 creb3l3b coding upstream 453188 52847049 ~ 52904765 (+)
XLOC_015942 NA coding upstream 758764 52572322 ~ 52599189 (+)
XLOC_015948 NA coding downstream 17175 53443697 ~ 53461828 (+)
XLOC_015949 NA coding downstream 152727 53579249 ~ 53580772 (+)
XLOC_015950 ranbp3b coding downstream 192746 53619268 ~ 53677508 (+)
XLOC_015951 CU861888.1 coding downstream 259549 53686071 ~ 53686188 (+)
XLOC_015952 ctnnbl1 coding downstream 293506 53720028 ~ 53815532 (+)
XLOC_015940 NA non-coding upstream 1155502 52154395 ~ 52202451 (+)
XLOC_015938 NA non-coding upstream 1254969 52102455 ~ 52102984 (+)
XLOC_015935 NA non-coding upstream 1408225 51941626 ~ 51949728 (+)
XLOC_015954 NA non-coding downstream 616256 54042778 ~ 54043791 (+)
XLOC_015955 NA non-coding downstream 659371 54085893 ~ 54270366 (+)

Expression


Co-expression Network