XLOC_015948


Basic Information

Item Value
gene id XLOC_015948
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 53443697 ~ 53461828 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00033322
GTCGGTTACACGCATGCGCAGCCATGATGGCGATGCTCGAATGTAAACACCTGCATGGGATTACACGATCAAGCAGCCCTACCTGATCTTCCTCATGGCTGATTCTGTGTCGATGAGGCCAAGGATCTGGATGGACACAGACACGTTGCTTTTCTGGATGGCCAATTCCTTCTGCAACGCTCCGAAGAATCCATTCATCGCAAACTTAGTAGATGAATACGGAGTTACAAATGGACTTGCTATCTTACCTGAATCACAAACACATGGTTAAGCGTTACCTTTAGTGCCACTACAACAACATCATCACCATCAGGAAAAACTCAGAATTTATGTAGTCTGAATTTACAGTATTCATAAAACAGTACTTGGATGTCCTAAAACTTTCACTCAGATTCTGAAGTATGCATCTGATGGatacttaggccgtactcacactaggtacagttgcctcgaaccgggcca

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00033322 True 462 lncRNA 0.45 2 53443697 53461828

Neighbor

gene id symbol gene type direction distance location
XLOC_015947 celf5b coding upstream 17175 53357953 ~ 53426522 (+)
XLOC_015946 NA coding upstream 105474 53334778 ~ 53338223 (+)
XLOC_015945 zgc:165603 coding upstream 205228 53204750 ~ 53238469 (+)
XLOC_015944 si:ch211-182e10.4 coding upstream 320899 53114476 ~ 53122798 (+)
XLOC_015943 creb3l3b coding upstream 538932 52847049 ~ 52904765 (+)
XLOC_015949 NA coding downstream 117421 53579249 ~ 53580772 (+)
XLOC_015950 ranbp3b coding downstream 157440 53619268 ~ 53677508 (+)
XLOC_015951 CU861888.1 coding downstream 224243 53686071 ~ 53686188 (+)
XLOC_015952 ctnnbl1 coding downstream 258200 53720028 ~ 53815532 (+)
XLOC_015953 CABZ01050238.1 coding downstream 418841 53880669 ~ 54015147 (+)
XLOC_015942 NA non-coding upstream 844508 52572322 ~ 52599189 (+)
XLOC_015940 NA non-coding upstream 1241246 52154395 ~ 52202451 (+)
XLOC_015938 NA non-coding upstream 1340713 52102455 ~ 52102984 (+)
XLOC_015935 NA non-coding upstream 1493969 51941626 ~ 51949728 (+)
XLOC_015954 NA non-coding downstream 580950 54042778 ~ 54043791 (+)
XLOC_015955 NA non-coding downstream 624065 54085893 ~ 54270366 (+)
XLOC_015956 CU179656.2 non-coding downstream 843782 54305610 ~ 54314209 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G328738 NA non-coding CI01000112 null 1572366 ~ 1572589 (-)