XLOC_016543


Basic Information

Item Value
gene id XLOC_016543
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 33843402 ~ 33926779 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00033879
GTGTCTTGGAGGCTAACTTAACGTTATACCAAGTGACAGAATGCACAGAAAACACATTGTCATGTTACTTGTTGCTAAACCAGGGCGGTTGTCCGTGTCTGTCGAGCGCCCAGACGAGCGTGTTTGTGCTAGACTGAATGGCTGCATTTTAAGTGTCTCTTGGCACACACACAGCAAATACCTGCACCAGGTGGATCTGCAGCcttgacacacacgcacacacacacgcgcctCGGGTGCAACTGCGAGATGTGCGATTCGAAATGCAAAACTTTTACATGCACATCTGTAAGCTAATGACTTACAAAAATCAGCATAATGAAATTT
>TCONS_00033379
AAAAATTCAATCAAAAAGccagtttgtttaattttaacatcaaatctGGTAACATAAAGGCTAGGAATCAATCAGTCTTTGAAAGCTAGTGTCTTGGAGGCTAACTTAACGTTATACCAAGTGACAGAATGCACAGAAAACACATTGTCATGTTACTTGTTGCTAAACCAGGGTGAGTCTATACCTTTTCTACTATTATCACACAGCTACTTTTtggatgttatttttaatttctttataagTGTT

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00033879 False 327 lncRNA 0.46 3 33843402 33926691
TCONS_00033379 True 246 lncRNA 0.32 2 33925174 33926779

Neighbor

gene id symbol gene type direction distance location
XLOC_016542 NA coding downstream 58212 33782659 ~ 33785190 (-)
XLOC_016541 atp6v0b coding downstream 156188 33681199 ~ 33687214 (-)
XLOC_016539 b4galt2 coding downstream 166908 33476766 ~ 33676494 (-)
XLOC_016540 BX548164.1 coding downstream 273363 33569922 ~ 33570039 (-)
XLOC_016538 ccdc24 coding downstream 388128 33422411 ~ 33455274 (-)
XLOC_016544 ptch2 coding upstream 42433 33969212 ~ 33993636 (-)
XLOC_016545 eif2b3 coding upstream 82019 34008798 ~ 34072218 (-)
XLOC_016546 NA coding upstream 180051 34106830 ~ 34107985 (-)
XLOC_016547 cenpl coding upstream 201959 34128738 ~ 34138400 (-)
XLOC_016548 si:dkey-21n10.3 coding upstream 290864 34217643 ~ 34218528 (-)
XLOC_016537 NA non-coding downstream 561667 33271841 ~ 33281735 (-)
XLOC_016536 NA non-coding downstream 618486 33220032 ~ 33224916 (-)
XLOC_016535 NA non-coding downstream 801243 33037373 ~ 33042159 (-)
XLOC_016552 NA non-coding upstream 1688616 35615395 ~ 35621867 (-)
XLOC_016553 NA non-coding upstream 1801810 35728589 ~ 35733752 (-)
XLOC_016555 NA non-coding upstream 2149417 36076196 ~ 36078638 (-)
XLOC_016619 NA non-coding upstream 2452460 36379239 ~ 36425603 (-)

Expression


Co-expression Network