XLOC_016683 (si:ch211-14a17.10)


Basic Information

Item Value
gene id XLOC_016683
gene name si:ch211-14a17.10
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 38231695 ~ 38261272 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00032746
AGAGAGAAGAGCTGCATCCAGAATCCTGTTCTGAATCCTGATTGTAATCTTTCTTTATAGAAGCATGAACTTTTGTCTGGAAATAGTAGATATCCAGGTCCTGTAAATGCAGCTGCAGACTGGAGCAATGGACAAGATCCAGCATTTATGGCAATGGATTCCACAAAAGAAAAAAGAGCCACAGAGGACTGTTCTGGCCTACAGAAAGATCTTGATGAGATGAAGGATAAATGTATGGAGTTTTACAAAGAAGCAAAAGATAATATTATCAGTCTTAAAATCCAGTTGGATGAGCTTTACGATGAAGTCAGCTCCTCAAATAGTCCAGGATCCTCCAAGGATGTCTTAAAGATTCTCCAGAAATTCGTCGAACTGCAGGAGATTGAAACGATAATGAAAACTGAAAAAGACAACACAAATATTGAAGGACTGGAAAAGCGTGAAATGGAAGCAGAAAAAGACTTAGCAGAGATGACGAGAGCATTTTTTAGCGTTGAACTGTTGAATCACACAGTTTCAAAGAGAAGTGCTGAGACATCTAAGAGTGAAGCAATATCGATTGCTCTAAATGAATTCAAGAAATACTTAGAAGACAGACTCAAAAAACCAGGGGAACGAGGTGGCATTGCAGAACACGtgctGCAGATTGTCAAACTGCAAATTGAAGCGATGGACCTACAGACACGTCTCGCTAGTAAATATAAGACACAAGCGCAGATTGATGTAATTACAAACCAGCTAGAGTACAAAAAAGGCCTTGTATCTGATCTGAAAGAGGAGAGAGAAGAGATGACTGGAAACATACAAAATATTGATACACTCATTAAATCTCTGGATAAAGAAATACTGGACCTGAAGGCTGAATTATCAGCTCTTAAGCAAACACTTACTCAGCTTGATGGACTGGCGAAAGAATTTGATAACAAAAGAACCGAAGTAATGGACAAAATTGGCACATTGAAGGGAAAGGATGAGTTGGTTTCTAGAATTCTAACACTCCAGTTTGAATTTATGGAGGCACTGATTAATGCACAAGGACAAATTAAAGCAGACGAATTTAAGATCAATGATCTCCAGAAAGAGCTTGAAAAGGAGCAAGAAAGGACACTTTATTTTCAATCTGACAATGAAAATTTACGTGGAAAGCTGATTGCCCAGACAGAACAATGCAATGATGTGATGGATATGTACCAGAAAGCAGAAGCTGAACTGGATACTGCAGTGAAGGAAATGGCAGATTCAACCTCAAAGAAAGCTGTCCAGATTATTTTGCTGGGCTATGAAATAGATCAAGTAACAAAAGACATAAAAACATCTCCATCTAATGAAGACTTAAAGCGAAGACGGGATGAAAAACTCAAAGAAATGAATGCGTTAAAGAAGGAACTTGAGAAAAGTGAACCTAACTCTGGAAAAATTCTTAAAGTTATATCGCAGATGGAGGAAATCTGGAAACTACAGAGCGAAGATCCAGATAATTTACAAAAAATCAGCAATCGGCAGGAGAATGTCCTGAACTTAATTGAAGAATTAGATGACAAAATGCCTTCAAAACCAATGCTGCAAATCTTGGCTCTTCAGGCTGATGTGTCCTGGATAAGGGAAATGCTGCAAACAGTGAAAACACAAGCTCAGATCCAAAAAGCTGAACTCCAAAAGGAACTGGACAAGAAGGAGCAATTGCTGAATGAAAAGAACAAAGAATTAGCTACTGCGATTGAAGACGTCAACGAACTAAAAAGAGACATTGCTCAGCTGAAGAAAGAAGTTTCGATGTTGAAAACACAAATAAGCACAGCTGAAGAGACCGCCAAGAAGAAGATTAAAGATCTTGAAGAACAACTTAAACAGAGTAACCAAGAATTACATGATGCCAATACATCACTGAAAGAAAAGAATGCCTTACTAGCACGACAAGTTACTAAGATCAACAATCTCATAGACGAGGTGAGGACCTTGAAAAAGCAAGCACAAGACAACGAAACTCAACTAAATGCCAGAATAACTGATCTTGAAAGGAAACTAATTAAGAAGGAGGAAGAAAATGAAGAAATTCTCAAGGAGAATGAAAAgctgaaaaaaaattgtgtgggCACTTCTGAGTGCCCTGAACTCCAGAAGAAATATGAAGAAATGCAGGCTGAGTATAACACAACCATTTCTAAACTGAACAGTGATATTCTTCAGAAGGCTTTTTATATTAAAGCCCTAATCGATGAAGTGGAGAACCTGGATAGGCAGATTGCACAAGGATTCCCAGGATTGATAGAAGAACTGGAAGAAAAAGAAAGGGAATTGGAGGAGGCAAAGCGGAAGTTAAGAGCTCAAGGATCCATATCTGCCAAAACGCTGGATGTACTTCAGTTACTAAGTGAGATCTGGAAACTCGAAGAAAATCCAACTGAAGAAAATTCCAAAAAGATTCAGAGACTGGAAGTTAAATTAAATGTTCTGCTCAGTGAGTTGCAAAACTCTGAGAATGGGCTCGGACTGGCCCTGAATATAATGTCTCTAAAGGAATCAATGTCTAGACTAAAGCAAGGACAAACACAAATGCAAGAGAAATACACACGGGAAATCAATGGTCTGAAGAAACAAATAGATGACAAAGAAAAAGAGATTTTGATGTTGAAGGCCAACTGTGGTCAGGATCTGAaGGACAAGATACGGCAATTAGAGGAGGAGGTTAAAGAAAGCAAACAAAAGCTGAAAAAACTACAGCAAGAATCAGACGATCAGATCGCATcaCTGGAGAAACAAATTAGCAGAAAGAATCAGCAGCTTGCCACAACTGAAGACAAACTGGAGCAGACAAATGCTGAAAACGCTGCATTGAtcaaaaagCTGAACAGTCTGAATGATGAAATAGATAAAATCACAGATGAGAAAAACAACGCGCTAAAGAAAGCAGAAAAAGAAATCGCCGCTTTAAATGACAAGTTGCAATTGAAGGACGATGCACTTGCTAAAAAAGATGTGCTTCTGAAGGAGAAGGATGAATATATTAATGTAGTGAAAGATCAACGAGACAGTTTGAAAGAGGAGCTTGGAAGAGTGAAGGAGAGAAGCAAAGAGCTAGAGACAGATCTTAAAATAAAGGACCAGCAACTTGCTACCACCAAAGAAAAACTGAAGAAAGCAGATGCTGAAAATGAGCGCTTGGttcaaAAGCAGAAGCAACACGATGATGaactaaaaaaaatcacagaggaGAAAAATAATTTGCAAAATAAATTGCAAGATGAAATCAATGacttaaaaaaaacagttgaaacGCAAAATGAAGACCTTGCTAAGAAGAGCCAGAAACTCCAGGAGAAGGAGAAAGAAGTTACTAAACTACAGAAGGAAAATGATGATATAAATACAGAGCTTAAAGAAGAGAAAAAGAAATACAAGGaTGTGGTCAATgagaaagaaaaaattaaagaaGAACTTGATGAGACAAAAAAGAAATTGGAGGAAGCTGAGGAAAAAAAGGAACTCCCTCAGAAAGAATGGCCGAGTTTTGACGCAAACACTGCGCACCGCAGACTCATTCTGTCGCAGGATAAGAAAGAAGCACGAACCTCCTTACTGCCTCAATCTGTAAGAGATACCCCTGCACGCTACGACACGGCTATTGCAGCTCTCGCTACATTTGGCTTCAACACCGGAAAGCATTACTGGGAAATAGGGGTGGCAGGACGAAGTTGTTATGTTGTTGGAGTGGCCAGAGAGTCCGTTCAGAGGAAAGGCATCCTAAGATACAGCCCTTCAGCCGGCTATTGGGTTATTCTGAAGAAAAGAGATGGTACGCTCGTAGCTATTGATGACAGGGAGGTTCGGCTTAACATTGCCAAAACACCTTCTGTTGTTGGAGTCCAGGtgaactttaaaaataatgagGTAGCTTTATATAATGCAGAAAATAAGTCTATCATCTATAAGTTCACTGGCAATGACCTGAAGGAAAAAGTCTATCCGTATATTGAAACCTGCAGTGATTCCAGTATTAATGAGCCTCCATTGATCTTAAGGGAACCTCAATTACCCGAATGGCTCTTGCTCTTGGAATGATCTCCATATACTTGGAGTCtggttttaattgaaaaaaaaaatgctctttgCTTTAAAATTGCAGTTTGTTACTGCTCTAAACTGCATGCTtgcattttaatttgaaataatctttcatttaaataaaacattgaaattGTGAAAAAACAATTCATGTTCCTCACTGTGGGTAAATGAAGGGATTAAGCTGACCTCATATTATTTCAAACATGTATGAGATTTATTTGTGTAGAacttaaaagcaaatgttttgca
>TCONS_00032747
GTTACTGTGAAGTTTCTTTCACACAGTAATGGGGAGGAAAGAGAAACTCCTGATTTGTTCTTTCTTTGTGTCAGTTTACATGCTGACACTTGGGAAATGTGGTCCTGTAAATGCAGCTGCAGACTGGAGCAATGGACAAGATCCAGCATTTATGGCAATGGATTCCACAAAAGAAAAAAGAGCCACAGAG

Function

symbol description
si:ch211-14a17.10 Predicted to enable ubiquitin protein ligase activity. Predicted to be involved in protein ubiquitination. Predicted to be active in cytoplasm.

GO:

id name namespace
GO:0016567 protein ubiquitination biological_process
GO:0005737 cytoplasm cellular_component
GO:0061630 ubiquitin protein ligase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030616-581 Predicted to enable ubiquitin protein ligase activity. Predicted to be involved in protein ubiquitination. Predicted to be active in cytoplasm.

Ensembl:

ensembl_id ENSDARG00000076534

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00032746 False 4314 mRNA 0.38 46 38231695 38261272
TCONS_00032747 True 190 mRNA 0.42 3 38254095 38256589

Neighbor

gene id symbol gene type direction distance location
XLOC_016682 acin1a coding downstream 6223 38197820 ~ 38225472 (-)
XLOC_016681 NA coding downstream 37216 38192959 ~ 38194479 (-)
XLOC_016680 NA coding downstream 85994 38144162 ~ 38145701 (-)
XLOC_016679 trim110 coding downstream 89698 38134924 ~ 38141997 (-)
XLOC_016678 trim110 coding downstream 100347 38127986 ~ 38131348 (-)
XLOC_016684 rnf212b coding upstream 16003 38277275 ~ 38282079 (-)
XLOC_016685 zp3f.1 coding upstream 21375 38282647 ~ 38284749 (-)
XLOC_016686 zp3f.2 coding upstream 24142 38285414 ~ 38312757 (-)
XLOC_016687 slc7a8b coding upstream 56728 38318000 ~ 38337122 (-)
XLOC_016688 prmt5 coding upstream 81026 38342298 ~ 38363017 (-)
XLOC_016662 NA non-coding downstream 416322 37813663 ~ 37815373 (-)
XLOC_016652 NA non-coding downstream 815230 37413404 ~ 37416465 (-)
XLOC_016651 BX511231.1 non-coding downstream 822538 37405351 ~ 37409157 (-)
XLOC_016694 BX248328.1 non-coding upstream 1109539 39370811 ~ 39370927 (-)
XLOC_016697 NA non-coding upstream 1349049 39610321 ~ 39612464 (-)
XLOC_016699 NA non-coding upstream 1565432 39826704 ~ 39827511 (-)
XLOC_016700 NA non-coding upstream 1569413 39830685 ~ 40033058 (-)
XLOC_016703 NA non-coding upstream 1932795 40194067 ~ 40196570 (-)

Expression


Co-expression Network