XLOC_016686 (zp3f.2)


Basic Information

Item Value
gene id XLOC_016686
gene name zp3f.2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 38285414 ~ 38312757 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00032751
AGAGTTCAGCTTCTTTTTACAGAGAGCGTTTGGTTGGCACCTCCTTGGTCTGCGCTACCCGACCATGAATTGCCTGTggctttttgtttttgcagttgCCACAGCATTTGAGTCTGACGAAAGTAATGGTGATATACAAGTTAATTGCAAGGACCATTCTGTTCATGTCAAGTGGAAATTGGAGAAAACGATGACTGCAAATCCTGCTCGTCTATTCTTGGGTAGCTGCTTTCCTTCAGTGTTCTCTAACATGACGCAAGATGGAGCATATGCAGAATTTCACTATCCATTCAGTGCGTGCGGCTTCAGACGGATCTCAACGTGGAAATCCTTAGTGTACGAAAACCAACTAACTTACAGGCCATTGCCCAAACCTTACCCTCCAGCTTTTACCTATCCAGTTAGATGTGTATATGACAGTCCAAAAGGTTGGACTCCTGCCTTCCAGAGTCTTTCTACTGGCGAAATACAAGGTTATGGGCAACTAGCCTTTCAAATGGCAATCCTCAATCATGATTTCAGTGGTCCGGCAGAATCCACAGTCTTTCCTTTGGGATCTTTTGTACCTATATGGGCTGCTGTTGACCAGCAAGGCCATCAGCCACTGGTACTGTTTCTGGAGGAATGTGTAGCATCTGCAACACCCGAAATGAACGCAGATACACTTATACACCCACTCATCACTAATAAAggGTGTCTTGTAGATGGGAAGAAGAGTTTCTCCAGGTTTTTACCAAGGTTTCAATCTTCTTCGATTATGCTTCACCTTCAAGCTTTCACATTTGCTGTGGGACAAGAGGTTTACATCCATTGCAAGTTAATTGCATGGGATCCTGATGACCTCAATAAAACGAAGAAGGCGTGCAATTATAATAAAGCCACAGGAGAgtGGGAGCTTTTAGATGATCCATTTCAGAATTCTCTTTGCCAGTGCTGTGACTCAACCTGCAGTGGTCGTGAAAAGAAGGATGCagattttgCACCTCAAGGACTGGTGTTAAAATCTGTGTTAGGACCTTTGACTTTTACTGAGGAGTCCCAGTAATTTCTGCCCCAACTGTCTGTTTCTTCTCTCAGAAAAAGGTGCTGGATTCTTCATCAGGAGTCATGAAGAGCTGCCATTTTCAGATTATTTTCTTTACTGCTCCATCTTTTTTACATTGTCTATTAAAAACTGTGAAACGTGACTCTGTCTTTAAATGCTTGTCATAAAATGTCAATGTAAAAATGGTAAATCCTAAGAAAGGTTGGATGTTATAGAATTCAGTGTGTAATAGCATATGGTGAGGAAAAGGTTTGAGAATTGTCTGAAAAGTTTGAGAGTTGttgtgcaaaataaaaatatttaaacactttttatGTAGCTCATTTTTTTGCAACCTTTTGTAatgctttaattaattaatgaataattaatgtaaGGTTATTAAAATGTAAGTAGGTGATTCTAATTAACACTGTTCAGCAGG
>TCONS_00032752
CACCTCCTTGGTCTGCGCTACCCGACCATGAATTGCCTGTggctttttgtttttgcagttgCCACAGCATTTGAGTCTGACGAAAGTAATGGTGATATACAAGTTAATTGCAAGGACCATTCTGTTCATGTCAAGTGGAAATTGGAGAAAACGATGACTGCAAATCCTGCTCGTCTATTCTTGGGTAGCTGCTTTCCTTCAGTGTTCTCTAACATGACGCAAGATGGAGCATATGCAGAATTTCACTATCCATTCAGTGCGTGCGGCTTCAGACGGATCTCAACGTGGAAATCCTTAGTGTACGAAAACCAACTAACTTACAGGCCATTGCCCAAACCTTACCCTCCAGCTTTTACCTATCCAGTTAGATGTGTATATGACAGTCCAAAAGGTTGGACTCCTGCCTTCCAGAGTCTTTCTACTGGCGAAATACAAGGTTATGGGCAACTAGCCTTTCAAATGGCAATCCTCAATCATGATTTCAGTGGTCCGGCAGAATCCACAGTCTTTCCTTTGGGATCTTTTGTACCTATATGGGCTGCTGTTGACCAGCAAGGCCATCAGCCACTGGTACTGTTTCTGGAGGAATGTGTAGCATCTGCAACACCCGAAATGAACGCAGATACACTTATACACCCACTCATCACTAATAAAggGTGTCTTGTAGATGGGAAGAAGAGTTTCTCCAGGTTTTTACCAAGGTTTCAATCTTCTTCGATTATGCTTCACCTTCAAGCTTTCACATTTGCTGTGGGACAAGAGGTTTACATCCATTGCAAGTTAATTGCATGGGATCCTGATGACCTCAATAAAACGAAGAAGGCGTGCAATTATAATAAAGCCACAGGAGAgtGGGAGCTTTTAGATGATCCATTTCAGAATTCTCTTTGCCAGTGCTGTGACTCAACCTGCAGTGGTCGTGAAAAGAAGGATGCagattttgCACCTCAAGGACTGGTGTTAAAATCTGTGTTAGGACCTTTGACTTTTACTGAGGAGTCCCAGTAATTTCTGCCCCAACTGTCTGTTTCTTC
>TCONS_00032753
TTATACAGTAAATGTAACCCACGAACTACCTGTATACCCTTATACAGTTCCTTCTCTTAAATTATTTACTAGCCTACTAATAAAAGCAGTAATAACATAAACATTGATAGCTAGGCTAACGTTAGTTGTTTTATGTAATGAACAGTTGAAATTAATCGCATTCTTTGCCACATTTATCGAATATTTTCACGTTTGGAAACAGACGAAGCATCAGTAAATAGTGCGAGGGTcctttaaatacacacacacactgcacacaagTGTTTTTCCAGCTCCAGAGCTGCTGGACGGGAATGAATGGCACACCCGGATGGCGGAAGTTGCGCTGTACTATGAGCCTTATGCACACATTCGTAAATGCTCTTACAGCCTAAAGTTACTCGTACAGTAAAGCATCTCGTCTGTAACATCGTACGGTGAAATTAGAAGAGGAGGAGCGGATGAATTAGGCTTTGAGCAGCCGACGGGCTTCGGCGAGAGGAATTACTGCGCGGCCAAAGATCCAGTCATGACTCCGTCAGTGCGTTTACAGGAAATGATCCGGGTCATCCGAAGTGCCCGGACGCAAGGTGAAGAAAGGGGCATCATCCAAAAAGAGTGTGCAGAAATCCGGGCACAGTTTCGTCAGACTGACAACGGGGAGCGTTCGCACAGTCTGGCAAAACTACTGTATGTGCACATGCTGGGCTACCCTGCACACTTCGGCCAGATGGAGTGTGTACGTCTGATTGCGAGTCCCAGGTACAGCGAGAAGAGGATTGGTTACCTGGGAGCAATGATGCTCCTGGATGAGAAGCAAGACGCCAGCTTACTGATCACCAACTCAATCAAGAATGACCTTTCCCACAGCAGTCAGTATGTCCAGTCTCTGGCTCTCTGCACTTTGGCCTGCATGGGTTCATCAGAGATGTGTCGAGACCTGGCGCCAGAGATCGAGCGGCTCCTCAGGGCCTCTACTTCTTACATCAAGAAAAAGGCCACGCTGTGTGCCGTCCACATAATAAGAAAGGTCCCAGAGCTTGCAGAGCTGTTTACTCCTTCAGCAAGGTCTCTGCTGTCTGAGAAGAACCATGGGGTTCTGCATGGAGCTGTAGTTCTCATCACCGAATTGTGCGAGCGAAATGCTGAAACTCTAGATAAGTTCCGCAAGGCTGTTCCGGAGCTGGTTACGATTATGAAAGGTCTTGTGACGTCCAGTTACTCTCCAGAACACAATGTTGCTGGTATCAGTGACCCCTTTCTGCAGGTGCGCATTCTTAGATTGCTAAGGATTCTGGGTCACAATAATGACTCTGCCAGTGATGCCATGAATGACTTGTTGGCACAGGTGGCTACAAATACAGACAGCAGTAAGACTGCAGGCAGTGCTGTGCTGTATGAAACCGTTCTGACTATCATGGACATCAACTCAGAGAGTGGGCTTAGGGTGCTGGCTGTTAATATTCTGGGGAGGTTTCTATTAAATAATGACAGGAATATTCGCTACATATCAATGACGTCACTCCAGAAGATAGTGCAGACGGACCACAATGCAGTGCAGCGCCACAGAGGCACCATTGTTGACTGTCTGAAAGATCAGGACACCTCAGTCAAACGTCGTGCTCTGGAACTGTCACTTGCCCTCGTGTCACCTGTAAACATTCGCTCAATGATGAAGGAGCTCCTTATTTTTCTTTCATCCTGTCCTGTAGAACTGCGATCTCAAACTGCTTCTGGGATCTTCAACGCTGCTGAAAGGTATTCCCCTTCTAAGCGCTGGCACATTGATACCATCCTGCATGTGCTCACCACGGCTGGAGGTGATGTAAGAGATGAAACTGTGCCCAATCTGATCCAACTTATCACTACAGCATCTGAACTCCACTGTTACACCGTTCACAAGCTCTACAGAGCACTTGTAAAAGATATTTCACAGCAATCCTTGGTCCAAGTTGCATGCTGGTGTATAGGAGAGTATGGAGATTTGCTGCTGAAGGGCGAGTGTGAGGAGATCGAGCCTGTGCAGGTTACAGAGGATGACGTCCTGGATGCCTTGGAAACCGTTCTACAGTCTCACATGTCGGCTCCAGCAACCAGAGGCTTCGCACTCACTGCGACCATGAAGCTGAGCACTCGCATCACAGACAATGTCGACCGTATTAGAAGTATTGTCAGTATTTACGGCAGCTGTATTGACCTGGAGCTTCAGCAGAGAGCGGTGGAATATAATGCACTTTTCAAGAAATATGACCACATGAGAGCTGCGGTGTTGGAGAGAATGCCTTTGATGGAGAAAAACTCACCAGGCCACACTAATGGAGACTCATCAGGAGAGATTAAAGAGCCTGAGCCAGCCAAAACCAAACCTGTTGAGCCCATTTTGCTCTCAGAGCCAGCAAACCAGGTGTGTGATCTTCTGGATCTCTTGGGTGGGACGGACACACCAGTGCAGCCTAGCTCTGCCCCAACCAGCACTGCAACAACTACCTCTAGTGCCGATCTTCTGGACCTGCTGGGAGGACTGGAGCCCACGCCAGttCCTGCTGTGACGGTGTATGAGAAGAATGGAGTGAGCCTGAAGATCCAGTgtgacagtcagacagacacagACATCACAGTCACTCTTATTGCCTCAAACTCCACTCAGAATGACATCAGCAACTTTACTCTTCAAGCAGCTGTACCTAAGAGTGTTCAGCTGCAAATGAAGGCTCCGAGTGGGAATGTGATTGCAGCACATGGCCTCGGTCAAGTCACACAGACTGTTTTACTCAACAACCCAAACAAGGTCAGCCTTAAAATGCGGGTTCGAGTCTCTTACTCCGATCAGGGCACAATGCTTCAGGACACAGTACAAATTGACTCCTTTCCCAGTCCGTCTTGGAACAGTCAGCCATCAATCGGAGTCTTGTGACAGACCTATGTGAATCCAGACGTTAAACGGTCATCTGTGGAAATGGGCAGCTGCCCGTCAACCTCGCTGAACAGATTTGATACGACAGATTTTTATGATGTGTTACCTTGGTTTGAATTGTCTAGAACAAAAGTGTGGTTTATGTGCTGTTGTTATTACCACACAAGAGTGAACAAATTAATGTACACCATCATTAGATGAGGTCTTTTATGCACTGTCACTAAACAACTATATGAGAAGCCCCATAAATGATATTGTCTGGGAATGAAAACATCCTGAGCTCCAGTTGCCTTACTGTTAGTATCAAGCCTTTCCTCAGCATCTTTGCTTTGTCAATTATTAATTCTCTTCAGCCTCAGGACATTCCTGCACCAACATCGTATCCTTTTATTGACGGTGAATGTGAACTTGCCATTTCACATACTTAAAATGTCCTATACATATTTCTCAacctcattgtgtgtgtgtgaaatgacaAATATCCATTGTTTATTCCTCTTTCATCAAaacataatacaataaaacagaTATGGTATAACGTGTTGTTTTGGGAAGATGATACACATCTGTGTCTCTTTTAGATGCGCAAGAACTGAATAAGGGAGGTGTGTTAAAATTACtgattaaaatagaaataataatcaaACTTCTATAAGCTCTTTTACAGGAGTTTCCTAAACCATGAATAAAAGGGGTTGTTTCAGTGCACAGCTTTATACTGCAGAATCTGAGTCAAGCTAGAGCATAAGCTCGCATTAagactgtaaacagtgtttagaaAGCATCTGTATGATGCTCTCTCAATCCCGAGCAGTTGTGATGACAATAACATGGTTTATGCAAAGCCAAGTGTCCACTGGAGGCATTGAGCACCACAGCCTTCTGGAGATTCTGCTGTTGATTTCGATGGATATGATAACACACATTTCTACTATTTACAAGCTTAACTGATTAAATTTAGAGGAAAGACACTGGCAGGACTAATGCAGGTTTTCTCCTCCTCTGAGAGCCAGAACTAAATGCAGGACAGATCCTCCCTGGATTTTGTAGTCAGCAGCGGTTTTCTCATCATTCCTGAAATAAAGCAGAGATCATTTCAGAATCATGGCTAACATTTAGCATCAAAATGACGCTGTGCTGCAACCTTACATCTGTTTGCCGCTGTAAATGAGTCTCTGCTGTTGTGGCGGGATGCCCTCCTTTTCTTCCACTCTCTCTTTGATTCTCTCCACCTTGGTTGGGAAAAGATTTCAGTGGTTTTCCTCCACATTTAGtttcaaaaatacagaaatattatcatcataatattcCTACCTTGTCTGTAGGCTCGATGTCAATTTCTATTTCTTTTCCTGTGAGTGTCTGAGACGTGatataaaaatgattatttcTTATGCATCTCAATGGCTTACATAATAAAGTAAACATGCAGAGAATGCTCGGTTAAATTCAGCAAGAATCAAATACGCAACAATTCATGCACACATACGCAAATGAACCAAGGTTTCTATCTTAATTTGTAGTAAAATGTGGTTATTGCGATGCGCCCAAAATTTTTACTACGcttttactataataaaaccaCGGTTGAAAATTGTTTCTGAAAACAACTAACTTAATCATGAAACTCACATATTAGAGACAGATCATGTAAATGCTATGATAAATATCGCTTACCTTAACTTTAATCAACATTTTGAGGTATGTATTTTAACGAATACGATGGTAAGAGatgtttaatattataataatattttaacagaAGTAATTGATGAAACCTAACGCAAATGTACCGGTTAAAACCCTTCTGGTGAAATGAGAGGAAAAAACTGCCCTATTTCCCGTGTAGCTTAAATTAACTCCGGGTGGTTTGGTTCATCTCTATCTATGGTTCCGCATTTGGTCGTCTCGTTGAAATAAATGAAAGTCAAATAAAATGCTGCCAAAATCATTTAAAGAATTGTATATTGCTCAAATGTATAACTAATGATAATGCAGAAGTGTAAACCAGAAAATGGTTTAGTTCAAAAGTAAACGCTGTTATTTCCTAGTTGCCAGGTGTTATAAATTAACTTTACTGATGAGGAGAAACAGAGTTCAGCTTCTTTTTACAGAGAGCGTTTGGTTGGCACCTCCTTGGTCTGCGCTACCCGACCATGAATTGCCTGTggctttttgtttttgcagttgCCACAGCATTTGAGTCTGACGAAAGTAATGGTGGTAATGTTTATTACTGCACTAAAAAAAGTTGATCTATTGTTAAGAAAAAGGAGTTATGAAACATgttgtgggaaaagttgtttatttgtttgttagctGGTTGACTAACCACCATATTTTATAGTCTAACCTCCTACTGaaaagaccagcattgaaactaGCACACTAGCTTCAAAATTTACCTTACCAGCCAATATTGATTTCCTCAGCAGGGCTAGCGGACTTGAATTCTGATCCAAGATGCTTGACCTGCTAATTAGTACTTGCTTTGTAACCAAACTGATGCCAGAGTTGTTCAGTTTTCTTTAACTCTAAAAACTATTAAGTTCCACCTCTGTCATTTTTTTCCAGATATACAAGTTAATTGCAAGGACCATTCTGTTCATGTCAAGTGGAAATTGGAGAAAACGATGACTGCAAATCCTGCTCGTCTATTCTTGGGTAGCTGCTTTCCTTCAGTGTTCTCTAACATGACGCAAGATGGAGCATATGCAGAATTTCACTATCCATTCAGTGCGTGCGGCTTCAGACGGATC

Function

symbol description
zp3f.2 Predicted to enable acrosin binding activity. Predicted to be involved in binding activity of sperm to zona pellucida; egg coat formation; and positive regulation of acrosome reaction. Predicted to be active in extracellular matrix.

GO:

id name namespace
GO:0035803 egg coat formation biological_process
GO:0007339 binding of sperm to zona pellucida biological_process
GO:2000344 positive regulation of acrosome reaction biological_process
GO:0031012 extracellular matrix cellular_component
GO:0032190 acrosin binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030616-589 Predicted to enable acrosin binding activity. Predicted to be involved in binding activity of sperm to zona pellucida; egg coat formation; and positive regulation of acrosome reaction. Predicted to be active in extracellular matrix.
ZDB-GENE-030616-587 Predicted to enable clathrin adaptor activity. Acts upstream of or within axis elongation; central nervous system development; and vasculature development. Predicted to be located in Golgi apparatus; cytoplasmic vesicle; and membrane. Predicted to be part of AP-1 adaptor complex. Is expressed in central nervous system and head. Orthologous to human AP1G2 (adaptor related protein complex 1 subunit gamma 2).

Ensembl:

ensembl_id ENSDARG00000054313 ENSDARG00000054337

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00032751 False 1469 mRNA 0.40 10 38285414 38288024
TCONS_00032752 False 1034 mRNA 0.44 9 38286012 38287987
TCONS_00032753 True 5652 mRNA 0.43 22 38287358 38312757

Neighbor

gene id symbol gene type direction distance location
XLOC_016685 zp3f.1 coding downstream 665 38282647 ~ 38284749 (-)
XLOC_016684 rnf212b coding downstream 3335 38277275 ~ 38282079 (-)
XLOC_016683 si:ch211-14a17.10 coding downstream 24142 38231695 ~ 38261272 (-)
XLOC_016682 acin1a coding downstream 59942 38197820 ~ 38225472 (-)
XLOC_016681 NA coding downstream 90935 38192959 ~ 38194479 (-)
XLOC_016687 slc7a8b coding upstream 5243 38318000 ~ 38337122 (-)
XLOC_016688 prmt5 coding upstream 29541 38342298 ~ 38363017 (-)
XLOC_016689 si:ch211-119o8.6 coding upstream 672732 38985489 ~ 38992313 (-)
XLOC_016690 copb2 coding upstream 684600 38997357 ~ 39015130 (-)
XLOC_016691 rbp2b coding upstream 703309 39016066 ~ 39017838 (-)
XLOC_016680 NA non-coding downstream 139713 38144162 ~ 38145701 (-)
XLOC_016662 NA non-coding downstream 470041 37813663 ~ 37815373 (-)
XLOC_016652 NA non-coding downstream 868949 37413404 ~ 37416465 (-)
XLOC_016651 BX511231.1 non-coding downstream 876257 37405351 ~ 37409157 (-)
XLOC_016694 BX248328.1 non-coding upstream 1058054 39370811 ~ 39370927 (-)
XLOC_016697 NA non-coding upstream 1297564 39610321 ~ 39612464 (-)
XLOC_016699 NA non-coding upstream 1513947 39826704 ~ 39827511 (-)
XLOC_016700 NA non-coding upstream 1517928 39830685 ~ 40033058 (-)
XLOC_016703 NA non-coding upstream 1881310 40194067 ~ 40196570 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000004_16160899_16178772 AP1G2 coding CI01000004 null 16160357 ~ 16179144 (-)