XLOC_016685 (zp3f.1)


Basic Information

Item Value
gene id XLOC_016685
gene name zp3f.1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 38282647 ~ 38284749 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00032749
GCAGTGTTTATGTTGGACAATGATTTTAACATTTGTTGCACAAACTGATTCTAAGCTAATACCCAAATTTACTTTCCTTTAGCAATCACTCTGAACTGCGGCGAAAACTCTGTTTCTGTGCAATGGAGTGAAGTAGTCTCTCAAATAGATCCATTTCTTCTCCGGTTGGGGAGCTGCCCTCCATCTCGAGCATCTGTGAACGCTCAAGGGTCCGAAGCAGTGTTTCATGCTGAATTTGGGGCCTGTGACATTAGGAGGCTGGTGACAATGGGTGGGATTGTATTTGAGACTGAGATCACTTCTGTGGCTGAAACTGTGTCTTATCCAGTGGCATGTGTTTTTGAAAGGCCAAAAGAGTGGTCTCCTCCTTTGTATGATCCTCTGGCGTTTCAAACATATGGCCAGGGGGGTTTGGCCTTTCACTTGACTCTTATGAATGATGACTTCAGTGGTTTGGCCACTTCCACAACATTTTCTCTAGGCTCAACAATTCCAATTTCCGCCTCTGTTGAACAATTGGGCCATCAGCCTTTAATACTGTTCTTGGATGAATGTTGGGCCACTACAACACCAATATTGAGTCCAGAGTCTCTCATTCACCCACTAATTACAAATAGCGGATGTCTGGTAGACAGCAAAAAGACAAACTCTAGATTTCTGCCAAGAAACCAGCTTTCAGAGATCCGATTAGGTCTTCAAGCTTTCAGATTTGCCACAGGGCAAGATATCTACCTGCACTGCAGACTTGTGGCATGGGACCCTCAAGCTCTGGACAGTAGCAAGAAGGCATGTCAATATGACAGTGCCAGCTCACAATGGGTGTTGTTGGATGATCCTTCCCAGAGTTCTCTCTGCAGCTGTTGTGACACTAGTTGTCAAGGAACAAAGAAAAGGGAAATAACAGCAGGTTCCTCTGCAATATCTATGCTTGGGCCTCTGGTTATTACAAAGTGATTACAGTGTCAAATACCTTTTTAGGCATGTCCAGATTGTTCTCCATGCAACTGGAGCTGCTTTGGACACCCTAAGGGTTGAGTTCTTTCTGTTCCTGttaaactgtttattaaaattaataaactgtTCAAATGA
>TCONS_00032750
GTACATCGTCACAATGCAGTCCTTTTTGATACTTGTAGTCTTGCTTTGTCTGGCTTTTTCCATAGTGGCACGAGCAGCAATCACTCTGAACTGCGGCGAAAACTCTGTTTCTGTGCAATGGAGTGAAGTAGTCTCTCAAATAGATCCATTTCTTCTCCGGTTGGGGAGCTGCCCTCCATCTCGAGCATCTGTGAACGCTCAAGGGTCCGAAGCAGTGTTTCATGCTGAATTTGGGGCCTGTGACATTAGGAGGCTGGTGACAATGGGTGGGATTGTATTTGAGACTGAGATCACTTCTGTGGCTGAAACTGTGTCTTATCCAGTGGCATGTGTTTTTGAAAGGCCAAAAGAGTGGTCTCCTCCTTTGTATGATCCTCTGGCGTTTCAAACATATGGCCAGGGGGGTTTGGCCTTTCACTTGACTCTTATGAATGATGACTTCAGTGGTTTGGCCACTTCCACAACATTTTCTCTAGGCTCAACAATTCCAATTTCCGCCTCTGTTGAACAATTGGGCCATCAGCCTTTAATACTGTTCTTGGATGAATGTTGGGCCACTACAACACCAATATTGAGTCCAGAGTCTCTCATTCACCCACTAATTACAAATAGCGGATGTCTGGTAGACAGCAAAAAGACAAACTCTAGATTTCTGCCAAGAAACCAGCTTTCAGAGATCCGATTAGGTCTTCAAGCTTTCAGATTTGCCACAGGGCAAGATATCTACCTGCACTGCAGACTTGTGGCATGGGACCCTCAAGCTCTGGACAGTAGCAAGAAGGCATGTCAATATGACAGTGCCAGCTCACAATGGGTGTTGTTGGATGATCCTTCCCAGAGTTCTCTCTGCAGCTGTTGTGACACTAGTTGTCAAGGAACAAAGAAAAGGGAAATAACAGCAGGTTCCTCTGCAATATCTATGCTTGGGCCTCTGGTTATTACAAAGTGATTACAGTGTCAAATACCTTTTTAGGCATGTCCAGATTGTTCTCCATGCAACTGGAGCTGCTTTGGACACCCTAAGGGTTGAGTTCTTTCTGTTCCTGttaaactgtttattaaaattaataaactgtTCAAATGA

Function

symbol description
zp3f.1 Predicted to enable acrosin binding activity. Predicted to be involved in binding activity of sperm to zona pellucida; egg coat formation; and positive regulation of acrosome reaction. Predicted to be active in extracellular matrix.

GO:

id name namespace
GO:0035803 egg coat formation biological_process
GO:0007339 binding of sperm to zona pellucida biological_process
GO:2000344 positive regulation of acrosome reaction biological_process
GO:0031012 extracellular matrix cellular_component
GO:0032190 acrosin binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030616-590 Predicted to enable acrosin binding activity. Predicted to be involved in binding activity of sperm to zona pellucida; egg coat formation; and positive regulation of acrosome reaction. Predicted to be active in extracellular matrix.

Ensembl:

ensembl_id ENSDARG00000038720

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00032749 False 1089 mRNA 0.44 9 38282647 38284648
TCONS_00032750 True 1084 mRNA 0.45 10 38282647 38284749

Neighbor

gene id symbol gene type direction distance location
XLOC_016684 rnf212b coding downstream 568 38277275 ~ 38282079 (-)
XLOC_016683 si:ch211-14a17.10 coding downstream 21375 38231695 ~ 38261272 (-)
XLOC_016682 acin1a coding downstream 57175 38197820 ~ 38225472 (-)
XLOC_016681 NA coding downstream 88168 38192959 ~ 38194479 (-)
XLOC_016680 NA coding downstream 136946 38144162 ~ 38145701 (-)
XLOC_016686 zp3f.2 coding upstream 665 38285414 ~ 38312757 (-)
XLOC_016687 slc7a8b coding upstream 33251 38318000 ~ 38337122 (-)
XLOC_016688 prmt5 coding upstream 57549 38342298 ~ 38363017 (-)
XLOC_016689 si:ch211-119o8.6 coding upstream 700740 38985489 ~ 38992313 (-)
XLOC_016690 copb2 coding upstream 712608 38997357 ~ 39015130 (-)
XLOC_016662 NA non-coding downstream 467274 37813663 ~ 37815373 (-)
XLOC_016652 NA non-coding downstream 866182 37413404 ~ 37416465 (-)
XLOC_016651 BX511231.1 non-coding downstream 873490 37405351 ~ 37409157 (-)
XLOC_016694 BX248328.1 non-coding upstream 1086062 39370811 ~ 39370927 (-)
XLOC_016697 NA non-coding upstream 1325572 39610321 ~ 39612464 (-)
XLOC_016699 NA non-coding upstream 1541955 39826704 ~ 39827511 (-)
XLOC_016700 NA non-coding upstream 1545936 39830685 ~ 40033058 (-)
XLOC_016703 NA non-coding upstream 1909318 40194067 ~ 40196570 (-)

Expression


Co-expression Network