Gene
RNA
| Item | Value |
|---|---|
| gene id | XLOC_017090 |
| gene name | zgc:101562 |
| gene type | coding |
| species | zebrafish (Danio rerio) |
| category of species | model fish |
| Item | Value |
|---|---|
| chromosome id | NC_007131.7 |
| NCBI id | CM002904.2 |
| chromosome length | 55201332 |
| location | 2642855 ~ 2647566 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| symbol | description |
|---|---|
| zgc:101562 | Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Orthologous to human ZSCAN10 (zinc finger and SCAN domain containing 10); ZNF398 (zinc finger protein 398); and ZNF777 (zinc finger protein 777). |
| id | name | namespace |
|---|---|---|
| GO:0006357 | regulation of transcription by RNA polymerase II | biological_process |
| GO:0005634 | nucleus | cellular_component |
| GO:0043565 | sequence-specific DNA binding | molecular_function |
| GO:0046872 | metal ion binding | molecular_function |
| GO:0003676 | nucleic acid binding | molecular_function |
| GO:0000981 | DNA-binding transcription factor activity, RNA polymerase II-specific | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-041010-74 | Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Orthologous to human ZSCAN10 (zinc finger and SCAN domain containing 10); ZNF398 (zinc finger protein 398); and ZNF777 (zinc finger protein 777). |
| ensembl_id | ENSDARG00000040179 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TCONS_00034104 | True | 1346 | mRNA | 0.49 | 3 | 2642855 | 2647566 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| XLOC_017089 | il20ra | coding | upstream | 33585 | 2589414 ~ 2609270 (+) |
| XLOC_017088 | NA | coding | upstream | 134760 | 2506900 ~ 2508095 (+) |
| XLOC_017087 | NA | coding | upstream | 161040 | 2480910 ~ 2481815 (+) |
| XLOC_017086 | akap7 | coding | upstream | 163405 | 2460864 ~ 2479450 (+) |
| XLOC_017085 | NA | coding | upstream | 358042 | 2281624 ~ 2284813 (+) |
| XLOC_017091 | slc35a1 | coding | downstream | 21451 | 2669017 ~ 2679683 (+) |
| XLOC_017092 | syncrip | coding | downstream | 83870 | 2731436 ~ 2745385 (+) |
| XLOC_017093 | CABZ01027815.1 | coding | downstream | 260985 | 2908551 ~ 2908665 (+) |
| XLOC_017094 | amd1 | coding | downstream | 302439 | 2950005 ~ 2978968 (+) |
| XLOC_017095 | CEP170B | coding | downstream | 461031 | 3108597 ~ 3130881 (+) |
| XLOC_017084 | BX681416.1 | non-coding | upstream | 376243 | 2261933 ~ 2266612 (+) |
| XLOC_017082 | NA | non-coding | upstream | 428434 | 2213689 ~ 2214421 (+) |
| XLOC_017097 | NA | non-coding | downstream | 665096 | 3312662 ~ 3315637 (+) |
| XLOC_017099 | LO018608.1 | non-coding | downstream | 756081 | 3403647 ~ 3416581 (+) |
| XLOC_017107 | CABZ01067980.1 | non-coding | downstream | 1656891 | 4304457 ~ 4307735 (+) |
| XLOC_017108 | CABZ01067979.1 | non-coding | downstream | 1661955 | 4309521 ~ 4318473 (+) |
