XLOC_017094 (amd1)


Basic Information

Item Value
gene id XLOC_017094
gene name amd1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 2950005 ~ 2978968 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00034117
CGCAGACTGCCGTTCTGCGCTTACACAGTATGGCCGGCGATATTAGCTAGCACTCGCCTACGGTATTCTCTGTAAAAGGGAAGAcggtaaatacaaacaaaaaaataaggcaaCTACATCTGGACTGCTCAAGGACTGTAACTAAGCTATTAAGTTATAACCGCCAACGAAGgactacataatttgtgattccATCCGACGGTTTATTTTCTGTTGTTGGAGTCTGTTTGTCTCACGATGGAAGAGAGCAGTGCACACTTCTTCGAGGGGACCGAGAAGCTCCTGGAGGTGTGGTTCTCCCGGCAGGACGAAGCCAAAGGAACCGGGGATCTGCGCACAATCCCTAGatttGAGTGGGACAAACTTCTGGAGAATGTGCATTGTTTGATTATAAGTGTGACAAAGACTGATAAGCAGGAAGCTTATATACTCAGTGAGAGTAGCATGTTTGTCTCCAAGAGACGTTTCATTTTGAAGACATGCGGAACCACCCTCTTACTGCAGGCACTGGTGCCACTGCTGGAGCTGGCTCGCGAGTACTGCGGCTTTGATGCCATCGAGAATTTCTTCTATTCTCGCAAAAATTTTATGAAGCCCACCCATCAAGAGTTCCCTCACCGCAACTTCCAGGAGGAAGTCGAGTTCCTCAGCCAGATTTTTCCAAATGGAGCAGCCTACTGTATGGGACGTCTGAACTCAGACTGCTGGTATTTGTTTACGCTGGAGCTGCCGGAGTTCTGGGAGAATAAGCAGGCGGACCAGACACTAGAAGTTCTGATGAGTGACCTCGACCCAGCTGTGATGGACCAGTTCTACATGAAAGACGGTGTTTCTGCTAATGATGTCACTCGTATGAGTGGAATTCGTGACCTGATTCCAGGTTCAGTGATTGATGCCACGATGTTCAACCCTTGTGGATACTCCATGAATGGAATGAAAACAGATGGAACTTACTGGACGATTCACATCACCCCTGAACCAGAGTTCTCCTATGTCAGCTTTGAAACCAACCTCTCCCAGACGTCCTACGATGAGCTGATCTGCAGAGTCGTGGACGTCTTCAAACCAGGGAAATTTGTGACTACGCTTTTCGTCAACCAGAGCTCCAAATGTCGCAGCGTTTTCTCCTCCGCCCAGAAGCTGGAGAGTTACCGCCTGCTGGACCGCCAGTTGGCCCACTTCAACGACTACAACTTCGTCTTCACCAGTTACGCCAAGAGTCTCCAGCAGAAGCAGAGCTGATCCTCTGACATGAAGAAGCGTAAAAAGAAATCCTGCTGCTGCTGCGAGGAGCGACTCCGCGGCGGCGGCCGGCGTAGTCTTGTAGCGCAGGGGCGTTTCTCCTGCGTGGAGTCTTCTGGCTGTAGATCTTCCCTGAGTTTAACATTTATGCATTCTTGTACCTATGACGTAGATAATAATACTGTGCATGAAAGCTCTTCTCGTGTCTCCGTAGATATTCTAGCCCATTCTTGCTGTGATCTTGAAGTGCATGTAGAGTTCTCGAGCGCGGCGGTGTGCGCCAGGCATGTCACACCGTCTCGATACATGCAACGCTCCCTTCCCTTCCTGCAAGTGTGTCCTCGTATCCCCCACAGACAGGGTTTCAGACCTCACTAGGCCAGGACCCTGACATGCTCAGATCTTGATTGTTTGGGTGCTTCACTTCCCGTCGGTTTCATTCATGTGACTGAATTATCAAAGtgctgatgagtgtgtgtgtgtagctagCTTTCCTGAAAacaaacctagttaagccttataGACTGTAATCTGTCTattaaggggtagttcacccaaaaatgaacattaagtCACTCTTAaatgtttccaaacctttatgagttttatttcttctgttgaacacctaaagatattttgaagaatgttgaaaacctgtagctATTTACTTCcataaacactatggaagtcgatggttgcacctgcaaccattgactcccatagtgtTTATGGAAATAAATagctacaggttttcaacattcttcaaaacatctttttttaaatatcttactttgtgttTAACCGAAGAAATGTATAGGTGTTTCAAGCAAATGAGGATTGAACGTTTTTAGCAGAACTGTCTATTAAAGTGCACCAGAGAAGTGAATGTCCTGAAAGTAACCTTCATGTGACctacagtttttaaaaatgcagctCTTGTTTAAGTAAAACGGTAGATCAATAGTTAAACTTACACTAAACAAGCTGGTTAATTTCCATTCCTGTGAAGAAATGAAACTTGCTCCTTTCTCATCTGATAATCTTCATCAGCTTTAGTCAGAATACTGAAGACAATATTTCAGATGAagccttaaagagacagttcacctctAAATTCTGTCTCTTCATTTGTTACAAACCTTGAGCATCTTtaatatgttgaacacaaaagaagatagtttgtagacagctgtaaccattgatgtccattgtataggttttcagcattcttcaaaatatcttcctttgtgtttgacagaagtgTGTAGGGATTTGAAGCAAAAGATGACTGCATTTTCGTTTTTTGcagaactgtctctttaagtgcACTAGAGAAGTGAATGTCCTGAAAGTGACCTACATGTGACCTACAGTTTTGGTAAAATAATATTGGTTACTGAAAAAATGCAGTTCTTGTTTAAGTAAAACGGTAGTTTGATGGTGAACCTTACACTAAACATGCCGGTTAATTTCCATTCCTATGAAGAAATGAAACTCGCTCCTTTCTCATCTGATAATCTCCATCAGGTTTAGTCAGAATACTGAAGTCAATATGTCAGATGACagccttaaaggcacagttcacctctaaattctgtcatttactcatttgTTACAAACcatctgttgaacacgaaagaagatagtttgaagaaagctggaaaccattgACGTCTATAGtataggttttcagcattcttcgaaatatctacttttgtgtttgacagaagacaATGTTTAGGGGTTAGAAGCAGGTGAAAAAATGATGACTGAACTTTCGTTTTTTTGcagaactgtctctttaagtgcTCTAGAGAAGTAAATGTCTTGAAAGTGACCTACATGTGACCTAcagttttggtgaaataatatTGGTTACTGAAAAAAATGCAGCTCTTGTTTAAGTAAAATGGTAATTCGATGGTTAACCTTACACTACTTCCATTCCTGTGTGAAGAAATGAAACTCGCTCCTTTCTCATCTGATAATCTTCATCAGGTTTAGTCAGAATACTAAAGTCAATATTTCAGATGATggccttaaagagacagttcacctctAAATTCTGTCATCTAATCTTCATTTCTTACAAACCTTGAGcatctttcatctgttgaacacaaaagaagatagtttgtagaaagctgtaaccattgatgtccattgtataggttttcagcattcttcgaaatatcttcctttatgtttgacagaagaaagtgTACAGGGGTTTGAAGCAAATGATGACTGAACTTTTGTTTTTTGcagaactgtctctttaagtgcTCTAGAGAAGCGAAAGTCTTGAAAGTGACCTACATGTGACCTACAGTTTTGCTGAAATAATATTGGTTAGTATAAAAATGCAGTTCGTGTTTAAGTACAACGGTAGTTTGATGGTGAACCTTACACAAAACATGCCGGTTAATTTCCATTCCTATGAAGAAATGAAACTCGAAGTCAATATTTCAGAAGACAATcctaaagagacagttcacctctAAATTCGGTCTCTTCATTTGTTATAAACCTCGAGTAActttaatctgttgaacacaaaagaagatagtttgaagaatgctgaaaacttttAACTATCGAATTCCATTGTTGGAAAACCTATACTATAGAATTCAGTAGtaaaggttttcagcattcttcaaaatatctttatttgtgttcaacagaagacgcTCAAAGGCTTCTAATACGCGAGTAAGCAGTGAGTTCATCTTTGGGTGAAGGATCCCTTTAGTGTAATCAGCGATACGCAACCATCATGGTGAAATCCAGCATCGTCTTCCTTCCCTCCATTGCTAAAATGGCCTTTATTTTGAGTGTATAAACAGAAGACAAAGGGATCGGCTGGTTGAAAGTGTTCATAAAAGAAGCAGAGCTGGATTTTTCTGAATAATGAAGCCGCTTCAGAAGAAGCCATTAGGTTAGTTTCAGTCATTGTGAAGGACCCCGGGCCTGACACCTCTCAATTGAAACGGTTGGACAGACACTTTGCTTTCGTGAGCCGATCGCACAGCAAAGCATTTTCCTTTTTCTAAACAAagagtttctctctctctctccgcagAAGCACACAATAGACACACTGATCTGAGCATGTCAGGGCTGACCCGGATCATTCCACACCCCGCCACTGCATAACCTGCAGCTTTATTActtgatttctctctctcttttgttggATTTCTCTCCAGATCCTCTCTGTGCATTGAAGGAGATCATCCAACATTTTCCCCCATTTGCTATTGCATGCAACTAGCACACAGCAGGATGTTTACCGTGCGCTGTCTCTGCTTCGGCCCCTAGGTAACGTTCATTTTCTGTCGTGTGACAATCTGATGGCCGtgctgctttcattttctccctcCCTGTGTTGCTGGTTAGGCTGTGAGGGGGGATGATGTTTCTGTTTTGTCTCCTGTTTGGTTGCTGAAATCTCTTCCTAAACGTGGTTTTCCCCCAGAGAAAGCCTTTAATGAATGTCTAGTACGgttgacggatgtttactgtaggCAGTTTTAACGATTGGATGTAAACCGCTGCTAGGAGAAATCACAAGCATGATCATATCTAGATCACAGCTGGCACTTTTTCAGTGAATGGTTGGTAATTTCAAGCCTTTTCAGATCTTCTACACCGGCTCGTATAGAGCTGAGGGGGAAACATTGATGTTGCGGACCAACTCTTCCCCTCCTTTTCTGACCCGCTCTGAGTTTAACtgtttaattctatttattttttttccctccttCAGATGATTTGGATTTTCTTGTTTTCTATTTCGACTAGTTATTCCCCAGCCTGTGTAGGTTGGTGAGGAAACCCTTTAGAAAGGGTTGTGGGATTTCTCACAGGAAGTTGGGAAGGGGAAACTTTGCCGTTCCAATTCTCTTGCTATTTCCTTGGTCAAGATGTGCTAAATATATCTGTACTAAGAGCTTGATGCTTTCAATAAAGTTATTAACTATCA
>TCONS_00034118
gaaatgaccctgaagcacacagcataaggtaagagatgacagctgtctgtgctatctggggctgcttagtgatcatgaatgtattgttgtCACTTCAACGctatggaaacaccgcgattcattcggcagctgtttgatatgtgaatataattcagtaaaacaaatactagaaccgtatgagcaccggcaagagctttcatttgagctataacttgtacatgtcatataaaaaaatatgaaaatgaaccaatgttaaatacccagctcgggtctcCAAAACACTGTGTATTtgagtgtaaataacttttttgcagtagaataaaaaccaaaatgATGCACATGTGCATAACATATATATTCTACACTTTTAAACGAAACCGCGGAGTGTAACTGGTTAATGAATTTCTAAGTGATATAAGTATCTGACCTAACATTGATGATGAAAATCTCCATCTGAATGTATTGTTTCTAACATTGTTTCCCGTGACCTGTGCCGTCTCTCCAGATGAGTGGAATTCGTGACCTGATTCCAGGTTCAGTGATTGATGCCACGATGTTCAACCCTTGTGGATACTCCATGAATGGAATGAAAACAGATGGAACTTACTGGACGATTCACATCACCCCTGAACCAGAGTTCTCCTATGTCAGCTTTGAAACCAACCTCTCCCAGACGTCCTACGATGAGCTGATCTGC

Function

symbol description
amd1 Predicted to enable adenosylmethionine decarboxylase activity. Predicted to be involved in spermidine biosynthetic process and spermine biosynthetic process. Predicted to act upstream of or within polyamine biosynthetic process. Predicted to be active in cytosol. Human ortholog(s) of this gene implicated in lung non-small cell carcinoma. Orthologous to human AMD1 (adenosylmethionine decarboxylase 1).

GO:

id name namespace
GO:0006596 polyamine biosynthetic process biological_process
GO:0006597 spermine biosynthetic process biological_process
GO:0008295 spermidine biosynthetic process biological_process
GO:0006557 S-adenosylmethioninamine biosynthetic process biological_process
GO:0005829 cytosol cellular_component
GO:0004014 adenosylmethionine decarboxylase activity molecular_function
GO:0016829 lyase activity molecular_function
GO:0016831 carboxy-lyase activity molecular_function

KEGG:

id description
ko00270 Cysteine and methionine metabolism
ko00330 Arginine and proline metabolism

ZFIN:

id description
ZDB-GENE-040426-760 Predicted to enable adenosylmethionine decarboxylase activity. Predicted to be involved in spermidine biosynthetic process and spermine biosynthetic process. Predicted to act upstream of or within polyamine biosynthetic process. Predicted to be active in cytosol. Human ortholog(s) of this gene implicated in lung non-small cell carcinoma. Orthologous to human AMD1 (adenosylmethionine decarboxylase 1).

Ensembl:

ensembl_id ENSDARG00000043856

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00034117 False 5230 mRNA 0.42 9 2950005 2978968
TCONS_00034118 True 697 lncRNA 0.40 2 2971476 2972249

Neighbor

gene id symbol gene type direction distance location
XLOC_017093 CABZ01027815.1 coding upstream 41340 2908551 ~ 2908665 (+)
XLOC_017092 syncrip coding upstream 204620 2731436 ~ 2745385 (+)
XLOC_017091 slc35a1 coding upstream 270322 2669017 ~ 2679683 (+)
XLOC_017090 zgc:101562 coding upstream 302439 2642855 ~ 2647566 (+)
XLOC_017089 il20ra coding upstream 340735 2589414 ~ 2609270 (+)
XLOC_017095 CEP170B coding downstream 129629 3108597 ~ 3130881 (+)
XLOC_017096 ndufaf7 coding downstream 298652 3277620 ~ 3288089 (+)
XLOC_017097 NA coding downstream 333694 3312662 ~ 3315637 (+)
XLOC_017098 mfsd4b coding downstream 360280 3339248 ~ 3345526 (+)
XLOC_017099 LO018608.1 coding downstream 424679 3403647 ~ 3416581 (+)
XLOC_017088 NA non-coding upstream 441910 2506900 ~ 2508095 (+)
XLOC_017087 NA non-coding upstream 468190 2480910 ~ 2481815 (+)
XLOC_017085 NA non-coding upstream 665192 2281624 ~ 2284813 (+)
XLOC_017084 BX681416.1 non-coding upstream 683393 2261933 ~ 2266612 (+)
XLOC_017107 CABZ01067980.1 non-coding downstream 1325489 4304457 ~ 4307735 (+)
XLOC_017108 CABZ01067979.1 non-coding downstream 1330553 4309521 ~ 4318473 (+)
XLOC_017113 BX649499.2 non-coding downstream 2072221 5051189 ~ 5057952 (+)

Expression


Co-expression Network